NMRLab statistics

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Citations per year

Number of citations per year for the bioinformatics software tool NMRLab
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Tool usage distribution map

This map represents all the scientific publications referring to NMRLab per scientific context
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Protocols

NMRLab specifications

Information


Unique identifier OMICS_02849
Name NMRLab
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability No
Maintained Yes

Versioning


No version available

Publication for NMRLab

NMRLab citations

 (16)
library_books

Oxygen gradients can determine epigenetic asymmetry and cellular differentiation via differential regulation of Tet activity in embryonic stem cells

2017
Nucleic Acids Res
PMCID: 5814828
PMID: 29186571
DOI: 10.1093/nar/gkx1197

[…] and 32 K data points with acquisition time of 1.67 s, relaxation delay of 5 s and 128 scans. Resulting spectra were processed to 65 536 data point and corrected for phasing and zero referencing using NMRLab (). Resonance assignments and quantification were made with reference to Chenomx NMR Suite 7.1 (Chenomx). Samples were normalised to total protein, determined by a Bradford assay (Thermo Scient […]

call_split

Changes in human hepatic metabolism in steatosis and cirrhosis

2017
PMCID: 5403747
PMID: 28487605
DOI: 10.3748/wjg.v23.i15.2685
call_split See protocol

[…] Spectra were processed using NMRlab and Metabolab programmes[,] within Matlab, version R2015b (MathWorks, Massachusetts, United States). Briefly, the first data point was multiplied by 0.5, a line-broadening window function was a […]

library_books

Metabolomic profiling predicts outcome of rituximab therapy in rheumatoid arthritis

2016
PMCID: 5013418
PMID: 27651926
DOI: 10.1136/rmdopen-2016-000289

[…] Avance spectrometer (Bruker BioSpin, Billerica, Massachusetts, USA) equipped with a 5 mm TCI cryogenically cooled probe and an autosampler at 30°C. Following acquisition, spectra were processed using NMRlab and MetaboLab. Metabolite assignment and quantification were performed using several database. UPLC–MS analysis on lipid fraction was performed on a Q Exactive Hybrid Quadrupole-Orbitrap Mass S […]

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Malonate as a ROS product is associated with pyruvate carboxylase activity in acute myeloid leukaemia cells

2016
PMCID: 4972992
PMID: 27493727
DOI: 10.1186/s40170-016-0155-7
call_split See protocol

[…] All one-dimension spectra were processed using NMRLab [] in MATLAB and further analysed using MetaboLab [] as described before []. In HSQC spectra peaks were picked and assigned in a semi-automated manner using MetaboLab. To calculate percentage l […]

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Tracer‐Based Metabolic NMR‐Based Flux Analysis in a Leukaemia Cell Line

2016
PMCID: 4916734
PMID: 27347458
DOI: 10.1002/cplu.201500549
call_split See protocol

[…] mension with a spectral width of 159.0 ppm. Spectra were acquired with two scans and an interscan delay of 1.5 s, giving a total experiment time of approximately 4 h. All spectra were processed using NMRLab in MATLAB. Cosine‐squared window functions were applied to both dimensions. […]

call_split

Metabolic plasticity in CLL: adaptation to the hypoxic niche

2015
Leukemia
PMCID: 4705428
PMID: 26202928
DOI: 10.1038/leu.2015.187
call_split See protocol

[…] NMR data was processed using NMRLab, in the MATLAB (The Mathworks, Natick, MA, USA) programming environment. During data processing, spline baseline was applied to all of the 170 spectra using the MetaboLab software. All spectra […]


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NMRLab institution(s)
J W Goethe University, Frankfurt, Institute for Biophysical Chemistry, Biocentre, Frankfurt, Germany

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