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NMRPipe specifications

Information


Unique identifier OMICS_02844
Name NMRPipe
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Frank Delaglio <>

Publication for NMRPipe

NMRPipe citations

 (428)
library_books

Molecular mechanism of influenza A NS1 mediated TRIM25 recognition and inhibition

2018
PMCID: 5940772
PMID: 29739942
DOI: 10.1038/s41467-018-04214-8

[…] to a proton larmor frequency of 800 mhz. samples were measured at concentrations ranging between 0.1 and 0.5 mm in 20 mm na2hpo4, 150 mm nacl, 0.5 mm tcep at ph 6.5. all spectra were processed with nmrpipe and analysed using sparky, ccpnmr and cara (http://cara.nmr.ch). for backbone resonance assignments of the pryspry domain, hncacb, cbca(co)nh and hnca spectra were recorded. backbone […]

library_books

In silico optimization of a guava antimicrobial peptide enables combinatorial exploration for peptide design

2018
PMCID: 5902452
PMID: 29662055
DOI: 10.1038/s41467-018-03746-3

[…] 52 hz, respectively, were collected 256 t1 increments with 96 transients of 4096 points for each free induction decay. the experiment was acquired in an edited mode. all nmr data were processed using nmrpipe and analyzed with nmr view., the structure calculations were performed with the xplor-nih version 2.28 software by simulated annealing (sa) algorithm. noe intensities were converted into semi- […]

library_books

Rescue of conformational dynamics in enzyme catalysis by directed evolution

2018
PMCID: 5883053
PMID: 29615624
DOI: 10.1038/s41467-018-03562-9

[…]  mm cypa and 10.5 mm suc-afpf-pna. sample temperatures were calibrated using the 4% methanol + 96% methanol-d4 sample (dlm-5007, cambridge isotope laboratories). all data sets were processed with the nmrpipe/nmrdraw software package and visualized/analyzed using the program nmrfam-sparky., trosy-versions of a 3d hncacb and cbca(co)nh experiments were recorded at 25 °c to obtain a nearly complete s […]

library_books

Structural and Functional Insights into Bacillus subtilis Sigma Factor Inhibitor, CsfB

2018
PMCID: 5890618
PMID: 29526435
DOI: 10.1016/j.str.2018.02.007

[…] perturbation assays were carried out at 298k using a bruker avance spectrometer operating at 950 mhz with a txi cryoprobe controlled by topspin 3 (bruker biospin ltd). spectra were processed using nmrpipe/nmrdraw () and analyzed using ccpnmr analysis 2.2 (). 100 μm 15n-labelled csfba48e in 50 mm hepes ph 7.5, 150 mm kcl, 0.5 mm tcep was titrated with unlabelled σg or σe up to a ratio of 1:2 […]

library_books

Gcn4 Mediator Specificity Is Mediated by a Large and Dynamic Fuzzy Protein Protein Complex

2018
PMCID: 5908246
PMID: 29562181
DOI: 10.1016/j.celrep.2018.02.097

[…] a 5% fdr was used for the results from both searches. spectra were manually evaluated using the comet/lorikeet spectrum viewer (trans-proteomic pipeline) ()., all nmr spectra were processed using nmrpipe () and analyzed in nmrviewj (). nmr peak intensities for spin-label experiments were quantified using nmrviewj, and error bars reflect noise levels of the spectra. peak centers for rdc […]

library_books

HIV envelope V3 region mimic embodies key features of a broadly neutralizing antibody lineage epitope

2018
PMCID: 5856820
PMID: 29549260
DOI: 10.1038/s41467-018-03565-6

[…] 0.13 mhz 1h, 150.90 mhz 13c, and 60.81 mhz 15n frequencies, equipped with a cryogenically cooled probe head. all data were collected at 298.0 k. the nmr 1d data sets were processed and analyzed using nmrpipe and nmrdraw, respectively., kinetic measurements of fab binding to the sosip.664 constructs were carried out using the octet qke system (fortebio); 0.2 mg/ml of each his-tagged fab was immobil […]


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NMRPipe institution(s)
Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA

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