NMRViewJ protocols

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NMRViewJ specifications

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Unique identifier OMICS_17935
Name NMRViewJ
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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  • person_outline dataChord Spectrum Miner Team <>

NMRViewJ in pipelines

 (3)
2017
PMCID: 5312079
PMID: 28196956
DOI: 10.1128/mBio.01434-16

[…] with a 5-mm-long triple-resonance cryoprobe (1h, 13c, and 15n) with a z axis gradient, a bacs-120 sample changer, bruker iconnmr, and an automatic tuning and matching (atm) unit. nmrpipe () and nmrviewj () were used to process and analyze the collected spectra. the tmsp internal standard was used for chemical shift referencing and normalization of nmr peak intensities. nmr peaks from the 2d […]

2017
PMCID: 5539425
PMID: 28765220
DOI: 10.1128/mBio.00887-17

[…] equipped with a quadrapole-resonance qci-p cryoprobe (1h, 13c, 15n, and 31p), a samplejet automated sample changer, bruker icon-nmr, and an automatic tuning and matching (atm) unit. nmrpipe () and nmrviewj () were used to process and analyze the collected spectra. the tmsp internal standard was used for chemical shift referencing and normalization of nmr peak intensities. nmr peaks from the 2d […]

2014
PMCID: 4165433
PMID: 25228990
DOI: 10.1186/2049-3002-2-18

[…] dimension and 64 data points and a spectrum width of 17,607 hz in the indirect dimension. the 2d 1h-13c hsqc nmr spectra were processed using nmrpipe (nih, bethesda, maryland) [] and analyzed using nmrviewj version 8.0.3. peak intensities were normalized by the average peak intensity for a given spectrum and then assigned to a metabolite using chemical shift references from the human […]


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NMRViewJ in publications

 (86)
PMCID: 5889392
PMID: 29626214
DOI: 10.1038/s41467-018-03780-1

[…] chemical shift perturbations were calculated using previously published gr dbd nmr chemical shifts and calculated using the minimum chemical shift perturbation procedure in the nmr analysis program nmrviewj (onemoon scientific, inc.)., sequences were retrieved from the ensembl database. human sequences are from the grch38 genome build. geneious version 6.1.6 (biomatters limited) was used […]

PMCID: 5882848
PMID: 29615721
DOI: 10.1038/s41598-018-23821-5

[…] respectively., all nmr spectra, except the spectra for cross-saturation transfer and cpmg relaxation dispersion experiments, were processed by using topspin 3.1 (bruker) and analyzed by using nmrviewj. for cross-saturation transfer experiments, the spectra were processed by using topspin 3.1 (bruker) and analyzed by using sparky (t.d. goddard and d.g. kneller, sparky 3, university […]

PMCID: 5862848
PMID: 29563501
DOI: 10.1038/s41467-018-03511-6

[…] of ~ 0.1 mm. titration experiments were performed on 15n-labeled zufsp znfs by adding unlabeled mono- and di-ub (k48, k63 and linear) to a ratio of 1:1. the data were analyzed using sparky and nmrviewj software., a three-fold dilution series of mono-ub, k48-linked di-ub, k48-linked tetra-ub, or linear tetra-ub was premixed with zufsp-his6 (final concentration 100 nm). k63-linked ub4-rh110 […]

PMCID: 5908246
PMID: 29562181
DOI: 10.1016/j.celrep.2018.02.097

[…] results from both searches. spectra were manually evaluated using the comet/lorikeet spectrum viewer (trans-proteomic pipeline) ()., all nmr spectra were processed using nmrpipe () and analyzed in nmrviewj (). nmr peak intensities for spin-label experiments were quantified using nmrviewj, and error bars reflect noise levels of the spectra. peak centers for rdc measurements were determined […]

PMCID: 5925814
PMID: 29530980
DOI: 10.1074/jbc.RA117.000605

[…] used, and 300 μm of imidazole was used as an internal ph indicator. the nmr data were collected using a varian inova 600-mhz nmr spectrometer. data were processed using nmrpipe and analyzed using nmrviewj. dissociation constants (kd) were calculated by manually recording the 1h or 15n chemical shift for each residue after ataxin194–361 titration and subtracting the original chemical shift. […]


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