NNAlign statistics

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Citations per year

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Popular tool citations

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Associated diseases

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NNAlign specifications

Information


Unique identifier OMICS_06758
Name NNAlign
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Massimo Andreatta <>

Information


Unique identifier OMICS_06758
Name NNAlign
Interface Web user interface
Restrictions to use None
Input data Some peptides.
Input format PEPTIDE, FASTA
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Massimo Andreatta <>

Publications for NNAlign

NNAlign in publications

 (2)
PMCID: 4288714
PMID: 25568954
DOI: 10.1371/journal.pcbi.1003988

[…] epitope predictions., epitope score computed with iedb consensus method at a 10% threshold. predictions were not used for design and are provided for reference only., epitope score computed with nnalign at a 1000 nm threshold. predictions were not used for design and are provided for reference only., data are presented as ± sem from triplicates measured in biological duplicate., global […]

PMCID: 4297300
PMID: 25502872
DOI: 10.1007/s00251-014-0819-9

[…] hierarchical clustering of normalized quantitative data demonstrated significant differences in repertoires of peptides between the three dq variant molecules. the neural network-based method, nnalign, was used to identify peptide-binding motifs. the binding motifs of dq2.5 and dq7.5 concurred with previously established binding motifs. the binding motif of dq2.2 was strikingly different […]


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NNAlign institution(s)
Instituto de Investigaciones Biotecnologicas, Universidad Nacional de San Martin, San Martin, Argentina; Department of Bio and Health Informatics, Technical University of Denmark, Lyngby, Denmark
NNAlign funding source(s)
Supported by National Institutes of Health [HHSN272201200010C]; Agencia Nacional de Promocion Cientifica y Tecnologica, Argentina [PICT-2012-0115]; Department for International Development of the United Kingdom and the Bill and Melinda Gates Foundation [OPP1078791].

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