NNTC statistics

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NNTC specifications

Information


Unique identifier OMICS_21116
Name NNTC
Alternative name National NeuroAIDS Tissue Consortium
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No

Taxon


  • Viruses
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2

Maintainers


This tool is not available anymore.

Additional information


https://www.ncbi.nlm.nih.gov/pubmed/26228431

Publication for National NeuroAIDS Tissue Consortium

NNTC citations

 (3)
library_books

Gene expression patterns associated with neurological disease in human HIV infection

2017
PLoS One
PMCID: 5405951
PMID: 28445538
DOI: 10.1371/journal.pone.0175316

[…] Clinical and demographic features of the subjects in the NNTC gene expression dataset used for the study are shown in . The gene expression dataset consisted of Affymetrix GeneChip® Human Genome U133 Plus 2.0 arrays of the frontal cortex (Brodmann area 9), […]

library_books

Differing roles of autophagy in HIV associated neurocognitive impairment and encephalitis with implications for morphine co exposure

2015
Front Microbiol
PMCID: 4491626
PMID: 26217309
DOI: 10.3389/fmicb.2015.00653

[…] National NeuroAIDS Tissue Consortium Gene Array Project CEL files for individual arrays were retrieved from the NCBI Gene Expression Omnibus, GEO accession number GSE35864 (), and re-analyzed as descr […]

library_books

The National NeuroAIDS Tissue Consortium Brain Gene Array: Two Types of HIV Associated Neurocognitive Impairment

2012
PLoS One
PMCID: 3458860
PMID: 23049970
DOI: 10.1371/journal.pone.0046178

[…] tial influence on Affymetrix® gene array results , , . Four post-hybridization quality checking parameters showed that brain mRNA was reasonably intact for this type of study (see , , and http://www.nntc.org/gene-array-project/quality-control). Preliminary calculations using Partek Genomics Suite were done examining the effects of excluding samples with degradation. These trials did not reveal an […]

Citations

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NNTC institution(s)
Department of Genetics, Cell Biology and Anatomy; Bioinformatics and Systems Biology Core, Omaha, NE, USA; Department of Pharmacology and Experimental Neuroscience, College of Medicine, Omaha, NE, USA; Department of Epidemiology, College of Public Health, Omaha, NE, USA; Fred and Pamela Buffet Cancer Center, Eppley Institute for Cancer Research, University of Nebraska Medical Center, Omaha, NE, USA
NNTC funding source(s)
Supported by an NNTC-DCC grant, number 5U24MH100925-02.

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