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NNTC specifications


Unique identifier OMICS_21116
Alternative name National NeuroAIDS Tissue Consortium
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained No


  • Viruses
    • Human immunodeficiency virus 1
    • Human immunodeficiency virus 2


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Additional information


Publication for National NeuroAIDS Tissue Consortium

NNTC citations


Gene expression patterns associated with neurological disease in human HIV infection

PLoS One
PMCID: 5405951
PMID: 28445538
DOI: 10.1371/journal.pone.0175316

[…] Clinical and demographic features of the subjects in the NNTC gene expression dataset used for the study are shown in . The gene expression dataset consisted of Affymetrix GeneChip┬« Human Genome U133 Plus 2.0 arrays of the frontal cortex (Brodmann area 9), […]


Differing roles of autophagy in HIV associated neurocognitive impairment and encephalitis with implications for morphine co exposure

Front Microbiol
PMCID: 4491626
PMID: 26217309
DOI: 10.3389/fmicb.2015.00653

[…] National NeuroAIDS Tissue Consortium Gene Array Project CEL files for individual arrays were retrieved from the NCBI Gene Expression Omnibus, GEO accession number GSE35864 (), and re-analyzed as descr […]


The National NeuroAIDS Tissue Consortium Brain Gene Array: Two Types of HIV Associated Neurocognitive Impairment

PLoS One
PMCID: 3458860
PMID: 23049970
DOI: 10.1371/journal.pone.0046178

[…] tial influence on Affymetrix┬« gene array results , , . Four post-hybridization quality checking parameters showed that brain mRNA was reasonably intact for this type of study (see , , and http://www.nntc.org/gene-array-project/quality-control). Preliminary calculations using Partek Genomics Suite were done examining the effects of excluding samples with degradation. These trials did not reveal an […]


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NNTC institution(s)
Department of Genetics, Cell Biology and Anatomy; Bioinformatics and Systems Biology Core, Omaha, NE, USA; Department of Pharmacology and Experimental Neuroscience, College of Medicine, Omaha, NE, USA; Department of Epidemiology, College of Public Health, Omaha, NE, USA; Fred and Pamela Buffet Cancer Center, Eppley Institute for Cancer Research, University of Nebraska Medical Center, Omaha, NE, USA
NNTC funding source(s)
Supported by an NNTC-DCC grant, number 5U24MH100925-02.

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