NOBLAST specifications

Information


Unique identifier OMICS_16949
Name NOBLAST
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C
License GNU General Public License version 2.0
Computer skills Medium
Version 1.2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jacques Lagnel <>

Publication for NOBLAST

NOBLAST in publications

 (6)
PMCID: 4652418
PMID: 26582363
DOI: 10.1186/s12864-015-2130-z

[…] nt (e-value < 0.00001), retrieving proteins with the highest sequence similarity with the given unigenes along with their protein functional annotations. blastx was done in parallel using noblast. the output was used in blast2go, where gene ontology terms were retrieved and assigned to the transcripts []. the go categorization of all degs covers three hierarchies: cellular component, […]

PMCID: 4647701
PMID: 26573457
DOI: 10.1186/s12864-015-2161-5

[…] against low-abundance contigs was performed in order to maximize the detection of low expressed transcripts. all the blast (http://www.ncbi.nlm.nih.gov/pubmed/2231712) searches were performed using noblast program [] (http://sourceforge.net/projects/noblast/)., for sequence annotation of the assembled transcripts, first, a blastx similarity search against the ncbi protein database nr (e-value […]

PMCID: 4441504
PMID: 26000638
DOI: 10.1371/journal.pntd.0003771

[…] annotation of the assembled transcripts, a blastx similarity search against the ncbi protein database nr (e-value threshold 10–6; keeping the top 20 hits) was performed using the parallel version of noblast []. based on the blastx results (first best hit, e-value <1e-10), genes of interest (ie detoxification genes, and genes encoding putative insecticide targets) were searched by a perl/sql […]

PMCID: 4133083
PMID: 25099474
DOI: 10.1186/1471-2164-15-655

[…] annotate the assembled transcripts, we conducted a blastx similarity search against the ncbi protein database nr (e-value threshold 10-9; keeping the top ten hits). blastx was done in parallel using noblast []. the output was used in blast2go [] where gene ontology terms were retrieved and assigned to the transcripts (only the longest transcript was used per locus). the open reading frames (orf) […]

PMCID: 3591164
PMID: 23509803
DOI: 10.1155/2013/918136

[…] and classification were conducted using blast2go software. out of the degs 60.66% were annotated, 39.34% upregulated, and 21.32% downregulated. those genes without an annotation, including noblast, nomapping, and noannotation, may be attributed to scarcity of enough amount of information of selected database or parameter setting. the phenomenon is not distinct as it has been also […]


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NOBLAST institution(s)
Institute of Marine Biology and Genetics, Hellenic Centre for Marine Research, Heraklion, Crete, Greece; Division of Medical Sciences, University of Crete Medical School, Heraklion, Crete, Greece

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