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Noise Detector NoDe

An error correction algorithm trains to identify positions in 454 sequencing reads that are likely to have an error, and subsequently clusters those error-prone reads with correct reads resulting in error-free representative read. A benchmarking study with other denoising algorithms shows that NoDe can detect up to 75% more errors in a large scale mock community dataset, and this with a low computational cost compared to the second best algorithm considered in this study.

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NoDe forum

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NoDe classification

NoDe specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

NoDe distribution

versioning

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No versioning.

NoDe support

Maintainer

  • Pieter Monsieurs <>

Credits

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Publications

Institution(s)

Unit of Microbiology, Belgian Nuclear Research Centre (SCK CEN), Mol, Belgium

Link to literature

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