Noise filtering software tools | NMR-based metabolomics data analysis
One particularly insidious effect of aliasing or folding is that not only will NMR resonances fold into the spectral window but noise will as well. This can seriously compromise sensitivity, since noise can extend over an essentially infinite frequency range (so-called white noise) all of which, potentially, can fold into the spectrum and swamp the NMR resonances. It is therefore essential to prevent this by filtering out all signals above a certain frequency threshold with an audio band pass filter after detetction but prior to digitisation.
Analyses advanced time-domain of magnetic resonance spectroscopy (MRS) and spectroscopic imaging (MRSI) data. jMRUI can significantly help the user to track the processing history performed on data. The approach offers basic processing tracking and is not suitable for complex data processing and extensive studies. It helps to better organize the processing history and increases the reproducibility and documentability of all spectroscopic processing.
A toolbox for NMR data processing in MATLAB. To take advantage of fast matrix operations in MATLAB most processing commands in NMRLAB have been vectorized. Data processing can be achieved either by scripts or by a user-friendly command structure. An interface to WaveLab enables spectral denoising employing wavelet transforms.
Assists users nuclear magnetic resonance (NMR)-based metabonomics or metabolomics spectral processing and data analysis. Automics is a highly integrated platform that was developed to aid researchers for processing high dimensional NMR spectroscopic data. In addition, features such as data organization, data preprocessing and a wide range of data investigation techniques for multivariate data analysis, classification and regression have been implemented.
Provides an interface for process, analyze and visualize 1D and 2D nuclear magnetic resonance (NMR) data. MatNMR is an extendable open source software which includes several modules that allows users to run various analysis such as spectral deconvolution or quadrupolar tensor fitting. Besides, it offers a viewer for 2D data providing 2D and 3D contour, surface and line plots in a wide range of formats and standards.
Assists with analyze and management of multiple types of spectral and chemical data. KnowItAll Informatics System is an application that integrates toolsets for: spectral search, spectral identification, mixture analysis, multi-technique spectral data management, nuclear magnetic resonance (NMR) prediction, processing and subtraction, quality control analysis, reporting and publishing tools among others.
Assists users for metabolomics data analysis. Specmine includes a workflow that can be adapted for specific case studies, addressing tasks as data loading, pre-processing, normalization, metabolite identification, univariate and multivariate statistical analysis, clustering, machine learning and feature selection. It also offers modules for the visualization of data including box plots, volcano plots and spectra.