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Background reduction software tools | CLIP-seq data analysis

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wavClusteR
Desktop

wavClusteR

A statistical and computational framework for PAR-CLIP data analysis. A…

A statistical and computational framework for PAR-CLIP data analysis. A sensitive transition-centered algorithm specifically designed to resolve protein binding sites at high resolution in PAR-CLIP…

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BMix
Desktop

BMix

A toolbox for analysing PAR-CLIP data and detecting T-to-C substitutions…

A toolbox for analysing PAR-CLIP data and detecting T-to-C substitutions induced following RNA-protein cross-linking. BMix uses a constrained three-component binomial mixture to account for the…

G T A T C G C T A
PureCLIP
Desktop

PureCLIP

Allows to precisely capture protein-RNA interaction footprints from…

Allows to precisely capture protein-RNA interaction footprints from iCLIP/eCLIP-seq data. PureCLIP provides a promising method to analyse datasets, also for proteins with lower binding affinities or…

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BackCLIP
Desktop

BackCLIP

Identifies the presence of common RNA background in a PAR-CLIP dataset. We used…

Identifies the presence of common RNA background in a PAR-CLIP dataset. We used the measured sets of non-specific RNA backgrounds to build a common background set. Each element from the common…

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