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Noise reduction software tools | Genomic array data analysis

Array-based comparative genomic hybridization (aCGH) is a powerful tool to detect genomic imbalances in the human genome. The analysis of aCGH data sets has revealed the existence of a widespread technical artifact termed as 'waves', characterized…
PennCNV
Desktop

PennCNV

A free software tool for copy number variation (CNV) detection from SNP…

A free software tool for copy number variation (CNV) detection from SNP genotyping arrays. PennCNV can handle signal intensity data from Illumina and Affymetrix arrays. With appropriate preparation…

NoWaves
Desktop

NoWaves

Provides a practical solution to a problem that is recognized by many…

Provides a practical solution to a problem that is recognized by many researchers working with CGH arrays. NoWaves removes the wave bias from tumor profiles, thereby allowing for more accurate…

WACA
Desktop

WACA waves aCGH correction algorithm

A noise-reduction algorithm based on GC content and fragment size correction.

A noise-reduction algorithm based on GC content and fragment size correction.

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