non-B DB statistics

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non-B DB specifications

Information


Unique identifier OMICS_03586
Name non-B DB
Alternative name non-B DNA DataBase
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Non-B_database

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Maintainer


  • person_outline Robert Stephens

Publications for non-B DB

non-B DB citations

 (3)
library_books

FACT is a sensor of DNA torsional stress in eukaryotic cells

2017
Nucleic Acids Res
PMCID: 5389579
PMID: 28082391
DOI: 10.1093/nar/gkw1366

[…] abilize (AC/GT)n repeats due to the lower stability of this base pairing (–). To understand which type of non-B DNA can be expected at genomic regions bound by SSRP1 in CBL0137-treated cells, we used NON-B DB database, which provides the most complete list of ADS predictions available for the human genome (). Two different statistical methods, LOLA and ColoWeb (,), generated consistent results and […]

library_books

Detection of cis and trans acting Factors in DNA Structure Induced Genetic Instability Using In silico and Cellular Approaches

2016
Front Genet
PMCID: 4969553
PMID: 27532010
DOI: 10.3389/fgene.2016.00135

[…] ed repeats; “QGRS Mapper” searches for potential quadruplex-forming sequences (); and and our group have published algorithms to search for potential H-DNA-forming and Z-DNA-forming sequences () and Non-B DB v2.0 (). […]

library_books

Japanese founder duplications/triplications involving BHLHA9 are associated with split hand/foot malformation with or without long bone deficiency and Gollop Wolfgang complex

2014
Orphanet J Rare Dis
PMCID: 4205278
PMID: 25351291
DOI: 10.1186/s13023-014-0125-5

[…] eakpoint, using GEECEE (http://emboss.bioinformatics.nl/cgi-bin/emboss/geecee) for calculation of the average GC content, PALINDROME (http://mobyle.pasteur.fr/cgi-bin/portal.py#forms::palindrome) and Non-B DB (http://nonb.abcc.ncifcrf.gov) for the examination of the palindromes and non-B (non-canonical) structures, and Fuzznuc (http://emboss.bioinformatics.nl/cgi-bin/emboss/fuzznuc) for the assess […]

Citations

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non-B DB institution(s)
Advanced Biomedical Computing Center, Information Systems Program, SAIC-Frederick, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA; The Dell Pediatric Research Institute, Division of Pharmacology and Toxicology, The University of Texas at Austin, Austin, TX, USA

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