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Non-coding driver mutation detection software tools | Whole-genome sequencing

Distinguishing the driver mutations from somatic mutations in a tumor genome is one of the major challenges of cancer research. This challenge is more acute and far from solved for non-coding mutations.Source text:(Mularoni et al., 2016)…
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OncodriveFML
Desktop
Web

OncodriveFML

A method that estimates the accumulated functional impact bias of somatic…

A method that estimates the accumulated functional impact bias of somatic mutations in any genomic region of interest based on a local simulation of the mutational process affecting it. OncodriveFML…

G T A T C G C T A
SASE-hunter
Desktop

SASE-hunter Signatures of Accelerated Somatic Evolution hunter

A computational method to identify regulatory elements with cancer-associated…

A computational method to identify regulatory elements with cancer-associated signatures of accelerated somatic evolution (SASE). SASE-hunter searches for genomic regions with a significantly higher…

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LARVA
Desktop

LARVA Large-scale Analysis of Variants in noncoding Annotations

A computational framework designed to facilitate the study of noncoding…

A computational framework designed to facilitate the study of noncoding variants. LARVA addresses issues that have made it difficult to derive an accurate model of the background mutation rates of…

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