Non-coding RNA analysis steps

Bioinformatics tools

Databases

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement.…

Non-coding RNA analysis software tools and databases

Most Recent Tools

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uRNADB
Data

uRNADB uRNA database

Provides aligned, annotated and phylogenetically ordered sequences. The uRNADB…

Provides aligned, annotated and phylogenetically ordered sequences. The uRNADB is a database for the study of the structures and functions of various U RNAs. The alignments of the sequences represent…

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RandA
Desktop

RandA ncRNA Read-and-Analyze

Performs comprehensive ncRNA profiling and differential expression analysis on…

Performs comprehensive ncRNA profiling and differential expression analysis on deep sequencing generated data. RandA reveals the complexity of the ncRNA repertoire in a given cell population. It maps…

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ExInAtor
Desktop

ExInAtor

Aims to address the unique opportunity of comprehensively discovering cancer…

Aims to address the unique opportunity of comprehensively discovering cancer driver lncRNAs within and across tumour types using mutation data generated by projects such as TCGA (The Cancer Genome…

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Tricross
Desktop

Tricross

Detects genes and other potentially functional sequences that may be missed by…

Detects genes and other potentially functional sequences that may be missed by standard ORF-calling, RNA finding, and pattern matching software. Tricross produces a multi-way cross comparison of…

Most Popular Tools

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lnCaNet
Data

lnCaNet

A comprehensive regulatory network resource for human long non-coding RNAs…

A comprehensive regulatory network resource for human long non-coding RNAs (lncRNAs) and cancer genes. LnCaNet contains the pre-computed 8,494,907 significant co-expression pairs of 9641 lncRNAs and…

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LNCediting
Data

LNCediting Long Non Coding editing

A database of comprehensive information about Adenosine-to-Inosine editing…

A database of comprehensive information about Adenosine-to-Inosine editing sites in long non-coding RNAs (lncRNAs) across human, rhesus, mouse, and fly, to explore their potential functions.…

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PLNlncRbase
Data

PLNlncRbase

Provides detailed information for experimentally identified plant lncRNAs. In…

Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of…

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