Non-coding RNA analysis steps

Bioinformatics tools

Databases

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement.…

Non-coding RNA analysis software tools and databases

Most Recent Tools

Web app
A A A Developing Cortical… Developing Cortical Neuron Transcriptome Resource

DeCoN Developing Cortical Neuron Transcriptome Resource

Enables multidimensional data mining, exploration, and dissemination that is…

Enables multidimensional data mining, exploration, and dissemination that is scalable and designed to integrate future data on additional neuronal classes and different species. DeCoN enables…

A A A PeTMbase PeTMbase

PeTMbase

A living plant endogenous target mimicry dataset. PeTMbase enables a highly…

A living plant endogenous target mimicry dataset. PeTMbase enables a highly flexible user interface to retrieve endogenous Target Mimicry (eTM) sequences by choosing the plant species. It also…

Desktop app
A A A lncRScan-SVM lncRScan-SVM

lncRScan-SVM

Classifies protein coding and long non-coding RNA (lncRNA) transcripts using…

Classifies protein coding and long non-coding RNA (lncRNA) transcripts using support vector machine (SVM). lncRScan-SVM is a python package for lncRNA prediction that aims at classifying PCTs and…

Web app
Desktop app
A A A iSeeRNA iSeeRNA

iSeeRNA

Classifies the identification of lincRNAs. iSeeRNA is implemented for high…

Classifies the identification of lincRNAs. iSeeRNA is implemented for high throughput screening of lincRNAs from transcriptome sequencing data. This tool demonstrates high prediction accuracy and…

Most Popular Tools

A A A lnCaNet lnCaNet

lnCaNet

A comprehensive regulatory network resource for human long non-coding RNAs…

A comprehensive regulatory network resource for human long non-coding RNAs (lncRNAs) and cancer genes. LnCaNet contains the pre-computed 8,494,907 significant co-expression pairs of 9641 lncRNAs and…

A A A Long Non Coding… Long Non Coding editing

LNCediting Long Non Coding editing

A database of comprehensive information about Adenosine-to-Inosine editing…

A database of comprehensive information about Adenosine-to-Inosine editing sites in long non-coding RNAs (lncRNAs) across human, rhesus, mouse, and fly, to explore their potential functions.…

A A A PLNlncRbase PLNlncRbase

PLNlncRbase

Provides detailed information for experimentally identified plant lncRNAs. In…

Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of…

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