Non-coding RNA analysis software tools and databases

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement.…

Non-coding RNA analysis steps

Bioinformatics tools

Databases

Non-coding RNA analysis software tools and databases

Most Recent Tools

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GotohScan
Desktop

GotohScan

Finds shorter sequences (usually genes) in large database sequences…

Finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, etc.) by computing all semi-global alignments. GotohScan is a computationally sensitive full dynamic…

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incRNA
Desktop

incRNA Integrated ncRNA finder

Identifies, predicts and characterizes noncoding RNAs (ncRNAs). incRNA is a…

Identifies, predicts and characterizes noncoding RNAs (ncRNAs). incRNA is a machine learning framework which integrates sequence, structure, and expression data. The software was used, with data from…

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lncRInter
Dataset

lncRInter

Provides comprehensive datasets of lncRNA interaction pairs with experimental…

Provides comprehensive datasets of lncRNA interaction pairs with experimental evidences. lncRInter is a specialized resource of lncRNA interaction pairs with experimental evidences in publications.…

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LncRNAs2Pathway…
Desktop

LncRNAs2Pathways

Identifies pathways synergistically regulated by the interested long noncoding…

Identifies pathways synergistically regulated by the interested long noncoding RNA (lncRNA) sets based on an lncRNA-mRNA (messenger RNA) interaction network. LncRNAs2Pathways is a software which draw…

Most Popular Tools

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lnCaNet
Dataset

lnCaNet

A comprehensive regulatory network resource for human long non-coding RNAs…

A comprehensive regulatory network resource for human long non-coding RNAs (lncRNAs) and cancer genes. LnCaNet contains the pre-computed 8,494,907 significant co-expression pairs of 9641 lncRNAs and…

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LNCediting
Dataset

LNCediting Long Non Coding editing

A database of comprehensive information about Adenosine-to-Inosine editing…

A database of comprehensive information about Adenosine-to-Inosine editing sites in long non-coding RNAs (lncRNAs) across human, rhesus, mouse, and fly, to explore their potential functions.…

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PLNlncRbase
Dataset

PLNlncRbase

Provides detailed information for experimentally identified plant lncRNAs. In…

Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of…

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