Non-coding RNA analysis software tools and databases

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement.…

Non-coding RNA analysis steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

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PopitschEtAl201…
Dataset

PopitschEtAl2017

Provides several informations about antisense and intragenic Small regulatory…

Provides several informations about antisense and intragenic Small regulatory RNAs (sRNAs). This database allows users to consult data about small RNAs in Borrelia burgdorferi that are important for…

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ncRNAdb
Dataset

ncRNAdb Noncoding RNAs database

Gathers information about sequences and functions of transcripts which performs…

Gathers information about sequences and functions of transcripts which performs regulatory roles in the cell without protein-coding capacity. ncRNAdb contains about 30 000 sequences from 99…

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IRWRLDA
Algorithm
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Unitas
Desktop

Unitas

Permits high-quality sequence annotation without specific knowledge of the…

Permits high-quality sequence annotation without specific knowledge of the field. Unitas allows subsequent analysis of non-template 3′-nucleotides. It enables researches to elucidate possible…

Most popular analytical software and databases

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lnCaNet
Dataset

lnCaNet

A comprehensive regulatory network resource for human long non-coding RNAs…

A comprehensive regulatory network resource for human long non-coding RNAs (lncRNAs) and cancer genes. LnCaNet contains the pre-computed 8,494,907 significant co-expression pairs of 9641 lncRNAs and…

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LNCediting
Dataset

LNCediting Long Non Coding editing

A database of comprehensive information about Adenosine-to-Inosine editing…

A database of comprehensive information about Adenosine-to-Inosine editing sites in long non-coding RNAs (lncRNAs) across human, rhesus, mouse, and fly, to explore their potential functions.…

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PLNlncRbase
Dataset

PLNlncRbase

Provides detailed information for experimentally identified plant lncRNAs. In…

Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of…

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