Non-coding RNA analysis software tools and databases

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement.…

Non-coding RNA analysis steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

LeishDB
Dataset

LeishDB

Provides leishmania genomic information. LeishDB contains prediction and…

Provides leishmania genomic information. LeishDB contains prediction and annotation of L. braziliensis protein-coding genes and non-coding RNAs. It is able to store a myriad of annotation data from…

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CircView
Desktop

CircView

Visualizes and explores circular RNAs (circRNAs). CircView is a desktop…

Visualizes and explores circular RNAs (circRNAs). CircView is a desktop application for visualization and exploration of circRNAs in the context of a reference genome. This method is designed based…

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GotohScan
Desktop

GotohScan

Finds shorter sequences (usually genes) in large database sequences…

Finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, etc.) by computing all semi-global alignments. GotohScan is a computationally sensitive full dynamic…

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incRNA
Desktop

incRNA Integrated ncRNA finder

Identifies, predicts and characterizes noncoding RNAs (ncRNAs). incRNA is a…

Identifies, predicts and characterizes noncoding RNAs (ncRNAs). incRNA is a machine learning framework which integrates sequence, structure, and expression data. The software was used, with data from…

Most popular analytical software and databases

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lnCaNet
Dataset

lnCaNet

A comprehensive regulatory network resource for human long non-coding RNAs…

A comprehensive regulatory network resource for human long non-coding RNAs (lncRNAs) and cancer genes. LnCaNet contains the pre-computed 8,494,907 significant co-expression pairs of 9641 lncRNAs and…

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LNCediting
Dataset

LNCediting Long Non Coding editing

A database of comprehensive information about Adenosine-to-Inosine editing…

A database of comprehensive information about Adenosine-to-Inosine editing sites in long non-coding RNAs (lncRNAs) across human, rhesus, mouse, and fly, to explore their potential functions.…

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PLNlncRbase
Dataset

PLNlncRbase

Provides detailed information for experimentally identified plant lncRNAs. In…

Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of…

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