Non-coding RNA data analysis software tools

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement. For ribozymes and riboswitches, the RNA structure itself provides the biological function, but most ncRNAs operate as RNA-protein complexes, including ribosomes, snRNPs, snoRNPs, telomerase, microRNAs, and long ncRNAs.

Source text:
(Cech and Steitz, 2014) The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones. Cell.

Data preprocessing

Data analysis

Genome variant analysis

Genome-wide association study/Linkage/QTL

Enrichment analysis

Utilities

Unclassified tools