Non-coding RNA analysis steps

Bioinformatics tools

Databases

Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement.…

Non-coding RNA analysis software tools and databases

Most Recent Tools

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ECSBrowser
Data

ECSBrowser Escherichia coli Small RNA Browser

Provides an overview of small RNA (sRNA) in E. coli. ECSBrowser is a…

Provides an overview of small RNA (sRNA) in E. coli. ECSBrowser is a comprehensive screening for E. coli sRNAs using a deep sequencing approach. It shows that many as-yet-undiscovered sRNAs are…

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LeARN
Desktop

LeARN

Provides the infrastructure to deal properly with ncRNAs in the framework of…

Provides the infrastructure to deal properly with ncRNAs in the framework of any annotation project. LeARN is a flexible software package which handles the complete process of ncRNA annotation by…

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sRNAPredict
Desktop

sRNAPredict

Uses coordinate-based algorithms to integrate the respective positions of…

Uses coordinate-based algorithms to integrate the respective positions of individual predictive features of sRNAs and rapidly identify putative intergenic sRNAs. sRNAPredict can be used to…

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Mamit-tRNA
Data

Mamit-tRNA

Displays static individual 2D structures of human mitochondrial tRNA genes with…

Displays static individual 2D structures of human mitochondrial tRNA genes with location of polymorphisms and pathology-related point mutations. Mamit-tRNA is a database for mammalian mitochondrial…

Most Popular Tools

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lnCaNet
Data

lnCaNet

A comprehensive regulatory network resource for human long non-coding RNAs…

A comprehensive regulatory network resource for human long non-coding RNAs (lncRNAs) and cancer genes. LnCaNet contains the pre-computed 8,494,907 significant co-expression pairs of 9641 lncRNAs and…

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LNCediting
Data

LNCediting Long Non Coding editing

A database of comprehensive information about Adenosine-to-Inosine editing…

A database of comprehensive information about Adenosine-to-Inosine editing sites in long non-coding RNAs (lncRNAs) across human, rhesus, mouse, and fly, to explore their potential functions.…

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PLNlncRbase
Data

PLNlncRbase

Provides detailed information for experimentally identified plant lncRNAs. In…

Provides detailed information for experimentally identified plant lncRNAs. In the current version, PLNlncRbase has manually collected data from nearly 200 published literature, covering a total of…

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