NMFP specifications
- Unique identifier:
- OMICS_11758
- Software type:
- Package/Module
- Restrictions to use:
- None
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Advanced
- Requirements:
- Biobase, parallel, rbamtools, compiler, optparse
- Name:
- Non-negative Matrix Factorization Preselection
- Interface:
- Command line interface
- Input format:
- GTF
- Programming languages:
- R
- Stability:
- Stable
- Maintained:
- Yes
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NMFP support
Maintainer
- Jessica Li <>
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Publications
-
(Ye and Li, 2016)
NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data.
BMC Genomics.
PMID: 26818007 DOI: 10.1186/s12864-015-2304-8
Institution(s)
Department of Statistics, University of California, CA, USA; Department of Human Genetics, University of California, CA, USA
Funding source(s)
This work was supported by the start-up fund of Department of Statistics at University of California, Los Angeles, and the Hellman Fellowship from the Hellman Foundation.
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