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NSMAP | A method for spliced isoforms identification and quantification from RNA-Seq

Provides a method for identifying and evaluating expression levels of isoforms from RNA-Seq data. NSMAP is a statistical model for RNA-Seq data analysis which can be used without annotations from reference genome. The program aims to assist users in the discovery of previously unknown, alternatively spliced isoforms. It was tested on two publicly available mouse RNA-Seq.

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NSMAP forum

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NSMAP classification

NSMAP specifications

Unique identifier:
OMICS_01282
Software type:
Application/Script, Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Name:
Nonnegativity and Sparsity constrained Maximum A Posteriori
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

NSMAP distribution

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No versioning.

NSMAP support

Maintainer

  • Xiaobo Zhou <>

Credits

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Publications

Institution(s)

Department of Radiology, The Methodist Hospital Research Institute, Houston, TX, USA; Department of Pathology, The Methodist Hospital Research Institute, Houston, TX, USA; Weill Cornell Medical College, New York, NY, USA

Funding source(s)

Supported by NIH 1R01LM010185-01 and The Institute for Biomedical Imaging Sciences IBIS foundation.

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