Nonpareil pipeline

Nonpareil specifications

Information


Unique identifier OMICS_01419
Name Nonpareil
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License Artistic License version 2.0
Computer skills Advanced
Version 3.3.1
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Konstantinos Konstantinidis <>

Additional information


An online version is available at http://enve-omics.ce.gatech.edu/nonpareil/submit

Information


Unique identifier OMICS_01419
Name Nonpareil
Interface Web user interface
Restrictions to use None
Input format FASTA,FASTQ
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Konstantinos Konstantinidis <>

Additional information


An online version is available at http://enve-omics.ce.gatech.edu/nonpareil/submit

Publication for Nonpareil

Nonpareil IN pipeline

2017
PMCID: 5364173
PMID: 28392779
DOI: 10.3389/fmicb.2017.00442

[…] et al., 2012). the number of unique sequences per gene was calculated as described previously (wemheuer et al., 2015). in addition, coverage was determined for the rrna-depleted datasets using nonpareil version 2.4 (rodriguez and konstantinidis, 2014). corresponding curves were subsequently generated in r (version 3.2.5; r development core team 20141)., protein extraction was performed […]

Nonpareil institution(s)
Center for Bioinformatics and Computational Genomics, Georgia Institute of Technology, Ford ES&T Building, Atlanta, GA, USA; School of Biology, Georgia Institute of Technology, Ford ES&T Building, Atlanta, GA, USA; School of Civil and Environmental Engineering, Georgia Institute of Technology, Ford ES&T Building, Atlanta, GA, USA
Nonpareil funding source(s)
Supported by U.S. Department of Energy (Award DE-SC0006662) and by U. S. National Science Foundation (Award No 1241046).

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