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Normalization software tools | Information extraction

Cell line…
Desktop

Cell line recognition

Cell line recognition and normalization system, supporting corpora and tagged…

Cell line recognition and normalization system, supporting corpora and tagged documents. The aim is to create corpora that is suitable for training and evaluating machine learning systems to…

pGenN
Web

pGenN pivot-based Gene Normalization

A gene normalization system specifically tailored for plant species. The system…

A gene normalization system specifically tailored for plant species. The system consists of three steps: dictionary-based gene mention detection, species assignment, and intra species normalization.…

AuDis
Desktop

AuDis

A system for disease mention recognition and normalization in biomedical texts.…

A system for disease mention recognition and normalization in biomedical texts. AuDis utilizes an order two conditional random fields model. To optimize the results, we customize several…

SimConcept
Desktop

SimConcept

A hybrid method integrating a machine-learning model with a pattern…

A hybrid method integrating a machine-learning model with a pattern identification strategy to identify the individual components of each composite mention. SimConcept achieves high performance in…

Peregrine
Desktop

Peregrine

An indexing engine or tagger: a piece of software that can be used to recognize…

An indexing engine or tagger: a piece of software that can be used to recognize concepts in human readable text, based on a database (thesaurus) of known terms. Multi-word terms are correctly…

GeNo
Desktop

GeNo

A highly competitive system for gene name normalization, which obtains an…

A highly competitive system for gene name normalization, which obtains an F-measure performance of 86.4% (precision: 87.8%, recall: 85.0%) on the BioCreAtIvE-II test set, thus being on a par with the…

TaggerOne
Web

TaggerOne

A machine learning model for joint NER and normalization during both training…

A machine learning model for joint NER and normalization during both training and prediction. TaggerOne is not specific to any entity type, requiring only annotated training data and a corresponding…

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