Normalyzer statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Data normalization Data preprocessing Data analysis Data calibration chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

Normalyzer specifications

Information


Unique identifier OMICS_06720
Name Normalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Aakash Chawade <>

Information


Unique identifier OMICS_06720
Name Normalyzer
Interface Web user interface
Restrictions to use None
Programming languages R
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Aakash Chawade <>

Publication for Normalyzer

Normalyzer in publications

 (6)
PMCID: 5831606
PMID: 29507607
DOI: 10.1186/s13068-018-1052-9

[…] has shown higher quantification accuracy [, ]) and input data were normalised using quantile normalisation, independently determined as the most suitable normalisation method using the software normalyzer []. higher quantification accuracy for the sil proteins was achieved by label-based quantification through normalising light (endogenous) data with heavy (spike-in). proteins […]

PMCID: 5855760
PMID: 29439444
DOI: 10.3390/ijms19020538

[…] proteios, and subsequent feature matching and alignment between lc-ms/ms runs with a previously described workflow []. the resulting peptide data was normalized using loess-g normalization [] in the normalyzer software []. the normalized data was analyzed using danter []., all local, national and international guidelines and legislations have been followed and the required or appropriate […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] tools such as mettailor [] that use a dynamic block summarization method for correcting misalignments, reducing missing data, and apply a retention time–based local normalization procedure, or normalyzer [], that uses 12 different well-known normalization methods and compares the results based on different parameters. intcor [] corrects for peak intensity drift effects based on variance […]

PMCID: 5371560
PMID: 28330952
DOI: 10.14814/phy2.13187

[…] in order to obtain the total peak area for each peptide. srm raw data were normalized with normfinder (andersen et al. ) after evaluation of the optimal normalization method using the software normalyzer 1.1.1 (chawade et al. ). all technical replicates were merged for the statistical analysis., all the proteins included in the confirmatory srm dataset were entered into the protein […]

PMCID: 5065702
PMID: 27757071
DOI: 10.1186/s12014-016-9123-z

[…] is listed in an additional file f. after peptide identification and protein assembly in progenesis, the processed non-normalized data intensities from both mouse models were run through the software normalyzer 1.1.1 [, ]. normalyzer assesses the optimal normalization method for omics data sets compared to log2 transformation and the data sets are validated from both quantitative and qualitative […]


To access a full list of publications, you will need to upgrade to our premium service.

Normalyzer institution(s)
Department of Immunotechnology, Lund University, Lund, Sweden

Normalyzer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Normalyzer