NormFinder specifications

Information


Unique identifier OMICS_02317
Name NormFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for NormFinder

NormFinder in publications

 (630)
PMCID: 5946545
PMID: 29780614
DOI: 10.1186/s40851-018-0092-0

[…] dehydrogenase (gapdh), beta-actin, elongation factor 1 alpha (ef1a), and ribosomal protein l32 (rpl32), by three statistical software programs, genorm [], bestkeeper [], and normfinder []. as the results, the expression level of gapdh was shown to be the most stable so that it was used as the reference gene., data acquisition and analyses were performed by abi prism 7500 […]

PMCID: 5944930
PMID: 29746477
DOI: 10.1371/journal.pone.0196438

[…] statistical analysis on the cq value or using available software. several software programs are available for reference gene evaluation using different analytical approaches, such as bestkeeper [], normfinder [], and genorm []., in our laboratory, we have six commonly-used reference genes, actb, tata-box binding protein (tbp), cyclophilin, gapdh, b2m, and 18s rrna (). there are a few reasons […]

PMCID: 5946679
PMID: 29780378
DOI: 10.3389/fmicb.2018.00892

[…] genes for rt-qpcr in o. oeni sd-2a under different ethanol stress conditions (8, 12, and 16% (v/v) ethanol). the transcript stabilities of these genes were evaluated using the algorithms genorm, normfinder, and bestkeeper. the results showed that dnag and dpoiii were selected as the best reference genes across all experimental ethanol conditions. considering single stress experimental modes, […]

PMCID: 5935388
PMID: 29727459
DOI: 10.1371/journal.pone.0196715

[…] of the hkgs and rank them accordingly (http://www.leonxie.com/referencegene.php). reffinder evaluates the reference gene stability through integrated computational programs, including genorm, normfinder, bestkeeper. the program then uses the comparative delta ct method to compare and rank specific candidate endogenous control genes. subsequently it then assigns an appropriate weight […]

PMCID: 5930771
PMID: 29720087
DOI: 10.1186/s12864-018-4700-3

[…] in barley stress response studies before (table ). the suitability of each candidate reference gene was evaluated using three programs implemented within microsoft excel, namely genorm [], normfinder [] and bestkeeper []. because the ranking of the rgs tested differed depending on which algorithm was used (see additional file : table s2); thus, we also used reffinder […]


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NormFinder institution(s)
Molecular Diagnostic Laboratory, Department of Clinical Biochemistry, Aarhus University Hospital, Skejby, Aarhus, Denmark

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