norsp protocols

View norsp computational protocol

norsp statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Secondary structure prediction Disorder prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

norsp specifications

Information


Unique identifier OMICS_21452
Name norsp
Interface Web user interface
Restrictions to use None
Input data A protein sequence proteins than contains more than 70 residues.
Input format FASTA, sequence in one-letter residue code
Output data Position of the NORS region in the context of the submitted sequence, A file including the intermediate data used by NORSp: secondary structure, solvent accessibility, transmembrane helices and coiled-coil prediction.
Output format TXT, HTML
Computer skills Basic
Maintained Yes

Maintainer


  • person_outline Burkhard Rost <>

Publications for norsp

norsp in pipeline

2013
PMCID: 3732596
PMID: 23971032
DOI: 10.1155/2013/398968

[…] unstructured loops—“norsnet” []; nuclear localization signals—“predictnls” []; protein-protein interaction sites—“profisis” []; disulfide bridges—“disulfinder” []; nonregular secondary structure—“norsp” []; pfam hits—“hmmer” [, ]; local complexity—“ncbi-seg” []; bacterial transmembrane beta barrels—“proftmb” []; coiled-coils—“ncoils” []; protein residue flexibility—“profbval” []; sequence […]


To access a full list of citations, you will need to upgrade to our premium service.

norsp in publications

 (8)
PMCID: 4733110
PMID: 26824843
DOI: 10.1371/journal.pone.0147702

[…] structure of hba1 protein were 14.79% intermedia, 38.73% buried residues and 46.48% exposed residues ()., the structural annotations were done by online based predictprotein.org server [] and norsp (non-regular secondary structure), which identified 7 disordered regions in hba1 protein. compare to the native structure of hba1 protein, mutant g60v has 9 helixes with methionine and valine […]

PMCID: 4596253
PMID: 26491705
DOI: 10.1038/mtm.2015.37

[…] peptide (rsp) sequences of ngfr were purchased and the bamhi-xhoi fragment was inserted into a plasmid containing a multicloning site (mcs-plasmid). the ngfr open reading frame without the rsp (norsp-δngfr) was pcr amplified from the plasmid δngfr-2a-p47 (ref. ), as a ecori-noti fragment and inserted in the rsp-mcs-plasmid, in the same open reading frame as the rsp. the cohesin open reading […]

PMCID: 3732596
PMID: 23971032
DOI: 10.1155/2013/398968

[…] unstructured loops—“norsnet” []; nuclear localization signals—“predictnls” []; protein-protein interaction sites—“profisis” []; disulfide bridges—“disulfinder” []; nonregular secondary structure—“norsp” []; pfam hits—“hmmer” [, ]; local complexity—“ncbi-seg” []; bacterial transmembrane beta barrels—“proftmb” []; coiled-coils—“ncoils” []; protein residue flexibility—“profbval” []; sequence […]

PMCID: 3596386
PMID: 23516402
DOI: 10.1371/journal.pone.0057354

[…] molecular recognition feature predictor (α-morfs-ii) based on pondr fit prediction and a large positive data set , ., the prediction of potential disulphide bonding non-regular secondary structure (norsp), nuclear localisation sequence (nls); protein-protein binding and protein-dna binding was undertaken using the predictprotein server (technischen universität mϋnchen (tum), […]

PMCID: 2807366
PMID: 19933700
DOI: 10.1093/hmg/ddp524

[…] the first multi-reference alignment were randomly chosen from the raw images., human huntingtin amino acid sequence (homo sapiens; np_002102) was analyzed for predicted secondary structure using: norsp () and prof (profile network prediction heidelberg) () from the predictprotein server (http://www.predictprotein.org/) (). huntingtin orthologues for the multiple sequence alignments: dog […]


To access a full list of publications, you will need to upgrade to our premium service.

norsp institution(s)
CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University; Columbia University Center for Computational Biology and Bioinformatics (C2B2); North East Structural Genomics Consortium (NESG), Department of Biochemistry and Molecular Biophysics, Columbia University; Department of Pharmacology, Columbia University, New York, NY, USA
norsp funding source(s)
Supported by grants 1-P50- GM62413-01 and RO1-GM63029-01 from the National Institute of Health (NIH).

norsp reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review norsp