notseq pipeline

notseq specifications


Unique identifier OMICS_16343
Name notseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Reads one or more nucleotide or protein sequences. The input is a standard EMBOSS sequence query (also known as a 'USA').
Input format FASTA
Output data The output is a standard EMBOSS sequence file.
Output format SEQ
Operating system Unix/Linux, Mac OS, Windows
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Gary Williams <>

notseq IN pipeline

PMCID: 2837037
PMID: 20105308
DOI: 10.1186/1471-2164-11-68

[…] if the second best alignment resulted in an e-value that was at least 105-fold larger than the e-value of the best alignment. sequences with alignments not matching these criteria were extracted by notseq [55] and subsequently aligned by blast searches with lower stringency. stringency in the following rounds was adjusted by choosing word sizes of 15, 11 and 7., the number of bac-es […]

notseq institution(s)
MRC Rosalind Franklin Centre for Genomics Research Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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