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NovoExD

Provides a de novo peptide sequencing method for ExD spectra. NovoExD is a modified spectrum graph with multiple edge types, denoted as graph with multiple edge types (GMET), derived from to model ExD spectra. It uses a spectrum graph model, considers multiple peptide tags to separate a peptide into small mass regions, and integrates fragment ion charge and amino acid composition (AAC) information. It then combines small regions to output complete sequences of candidate peptides.

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NovoExD forum

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NovoExD classification

NovoExD specifications

Software type:
Application/Script
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

NovoExD distribution

versioning

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No versioning.

NovoExD support

Maintainer

  • Fang-Xiang Wu <>

Additional information

Access available upon request.

Credits

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Publications

Institution(s)

Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada; Division of Biomedical Engineering and Department of Computer Science, University of Saskatchewan, Saskatoon, SK, Canada; Division of Biomedical Engineering and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada

Funding source(s)

Supported by Natural Sciences and Engineering Research council of Canada (NSERC).

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