NovoHCD specifications

Information


Unique identifier OMICS_19056
Name NovoHCD
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Fang-Xiang Wu

Additional information


Access available upon request.

Publication for NovoHCD

NovoHCD citation

library_books

Spectra library assisted de novo peptide sequencing for HCD and ETD spectra pairs

2016
BMC Bioinformatics
PMCID: 5259825
PMID: 28155636
DOI: 10.1186/s12859-016-1330-0

[…] s having the same peptide sequences were selected first, and those pairs that can be successfully sequenced using only single spectrum separately are filtered out. Methods used in this filtration are NovoHCD [] and NovoGMET [], respectively. The reason for this filtration is that the focus of de novo sequencing using multiple spectra is for those ones that can not be sequenced by using just one sp […]

NovoHCD institution(s)
Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, SK, Canada; Division of Biomedical Engineering and Department of Computer Science, University of Saskatchewan, Saskatoon, SK, Canada; Division of Biomedical Engineering and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada
NovoHCD funding source(s)
Supported by Natural Sciences and Engineering Research Council of Canada (NSERC).

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