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NovoHMM specifications


Unique identifier OMICS_02480
Name NovoHMM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No


No version available

Publication for NovoHMM

NovoHMM citations


Peptide de novo sequencing of mixture tandem mass spectra

PMCID: 5297990
PMID: 27329701
DOI: 10.1002/pmic.201500549

[…] niques , , composition restriction by accurate mass measurements , , divide‐and‐conquer , or linear sequencing algorithms , are other methods used. Some well‐known programs are SHERENGA , Lutefisk , NovoHMM , PEAKS , PepNovo , and pNovo .De novo sequencing approaches have recently received more attention due to the growing availability of high mass accuracy instrumentation . The best de novo algo […]


A New Parameterized Algorithm for Rapid Peptide Sequencing

PLoS One
PMCID: 3925086
PMID: 24551059
DOI: 10.1371/journal.pone.0087476
call_split See protocol

[…] encing result by the percentage of the amino acids that are correctly determined by the program. and compare the sequencing accuracy and computation time of our program (PDS) with that of PepNovo , NovoHMM , a computer program that solves the de novo sequencing problem with a hidden markov model, and our previous work (TDS) which can compute the longest antisymmetric path in an extended spectru […]


Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE PCR

Proteome Sci
PMCID: 2881003
PMID: 20459704
DOI: 10.1186/1477-5956-8-24

[…] ph-theoretical approach by representing the spectrum with a "spectrum graph" []. Popular examples for this approach are Lutefisk [,] and PepNovo []. Different approaches are used by PEAKS online [,], NovoHMM [], PILOT [] and CompNovo []. For further information, a review of several common de novo algorithms is given elsewhere [,].Although all articles presenting a new de novo sequencing algorithm […]


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NovoHMM institution(s)
Institute of Computational Science, Institute of Plant Sciences, ETH Zurich, Switzerland

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