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Publication for NovoHMM
Peptide de novo sequencing of mixture tandem mass spectra
[…] niques , , composition restriction by accurate mass measurements , , divide‐and‐conquer , or linear sequencing algorithms , are other methods used. Some well‐known programs are SHERENGA , Lutefisk , NovoHMM , PEAKS , PepNovo , and pNovo .De novo sequencing approaches have recently received more attention due to the growing availability of high mass accuracy instrumentation . The best de novo algo […]
A New Parameterized Algorithm for Rapid Peptide Sequencing
[…] encing result by the percentage of the amino acids that are correctly determined by the program. and compare the sequencing accuracy and computation time of our program (PDS) with that of PepNovo , NovoHMM , a computer program that solves the de novo sequencing problem with a hidden markov model, and our previous work (TDS) which can compute the longest antisymmetric path in an extended spectru […]
Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE PCR
[…] ph-theoretical approach by representing the spectrum with a "spectrum graph" . Popular examples for this approach are Lutefisk [,] and PepNovo . Different approaches are used by PEAKS online [,], NovoHMM , PILOT  and CompNovo . For further information, a review of several common de novo algorithms is given elsewhere [,].Although all articles presenting a new de novo sequencing algorithm […]
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