NOVOMIR specifications

Information


Unique identifier OMICS_07333
Name NOVOMIR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Gerhard Steger

Publication for NOVOMIR

NOVOMIR citations

 (2)
library_books

High throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves

2013
BMC Genomics
PMCID: 3840582
PMID: 24245539
DOI: 10.1186/1471-2164-14-801

[…] et (http://mfold.rna.albany.edu/?q=DINAMelt/software) []. To obtain more reliable miRNA candidates, the precursors that remained after the previous filtering steps were subjected to analysis with the NOVOMIR (http://www.biophys.uni-duesseldorf.de/novomir/) and HuntMi method (http://adaa.polsl.pl/agudys/huntmi/huntmi.htm). The NOVOMIR tool discriminates pre-miRNAs from all other RNAs and is based o […]

library_books

MicroRNAs and their putative targets in Brassica napus seed maturation

2013
BMC Genomics
PMCID: 3602245
PMID: 23448243
DOI: 10.1186/1471-2164-14-140

[…] arched for regions that could be folded into a stable miRNA precursor-like hairpin with strong pairing between the mature miRNA and miRNA* sequence on the opposite hairpin arm. This analysis employed NOVOMIR, a program for the identification of plant miRNA genes []. We identified 78 putative novel miRNA sequences which mapped to 578 genomic loci in B. rapa. To eliminate siRNAs from repeat sequence […]

NOVOMIR institution(s)
Institut für Physikalische Biologie, Heinrich-Heine-Universität Düsseldorf, Düsseldorf, Germany

NOVOMIR review

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