novoMiRank protocols

View novoMiRank computational protocol

novoMiRank statistics

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novoMiRank specifications

Information


Unique identifier OMICS_11122
Name novoMiRank
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Andreas Keller <>

Publication for novoMiRank

novoMiRank in pipeline

2016
PMCID: 5117531
PMID: 27895807
DOI: 10.1186/s13148-016-0287-1

[…] using bowtie [] (one mismatch allowed). mirnas were quantified similar to the popular mirdeep2 [] algorithm. the prediction of novel mirnas was performed using an extended feature set built up on novomirank []. for classification, an adaboost model using decision trees was applied. novel mirnas were cross-checked against other rna resources, including the mirbase [], noncode2016 [], […]


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novoMiRank in publications

 (2)
PMCID: 5870816
PMID: 29587854
DOI: 10.1186/s40246-018-0148-4

[…] and a mirdeep2 score ≥ 1, yielding a set of 110 candidate unannotated mirna sequences (fig. ). we further assessed the similarity of these newly detected mirnas with annotated mirnas using the novomirank tool [], which provides z-scores to each sequence based on 24 different features. briefly, higher z-score numbers indicate less similarity to known mirnas. thus, while reads […]

PMCID: 5117531
PMID: 27895807
DOI: 10.1186/s13148-016-0287-1

[…] brain and heart samples, then compared the performance to agilent’s microarray technique and finally evaluated blood samples. using the web-based mirna analysis pipeline mirmaster and the tool novomirank [], we finally predicted 135 new high-likely mirna candidates specific for tissue and 35 new mirna candidates specific for blood samples., in this study, we examined the performance […]


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novoMiRank institution(s)
Chair for Clinical Bioinformatics, Saarland University, Saarbrücken, Germany; Internal Medicine II, University Hospital Heidelberg, Heidelberg, Germany; Department of Human Genetics, Saarland University, Homburg, Germany; University Hospital Zurich, Department of Neurology and University of Zurich, Switzerland; Department of Virology, Saarland University Medical School, Homburg, Germany; Department of Neurology, Charité Universitätsmedizin Berlin, Germany

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