Novor specifications

Information


Unique identifier OMICS_09388
Name Novor
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Javascript
Parallelization MapReduce
Computer skills Advanced
Version 1.1
Stability Stable
High performance computing Yes
Maintained Yes

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Publication for Novor

Novor in publications

 (7)
PMCID: 5819086
PMID: 29463217
DOI: 10.1186/s12862-018-1141-1

[…] by the use of a dedicated algorithm (for example mascot, byonic or maxquant; [–]), or through de novo only protein sequencing without a provided protein sequence database (for example peaks de novo, novor or pepnovo; [–]). de novo algorithms suffer from high rates of incorrect peptide sequence identifications, however []. hence, the adoption of error-tolerant algorithms that utilize protein […]

PMCID: 5874766
PMID: 29385081
DOI: 10.3390/proteomes6010007

[…] search algorithm of choice. although the galaxy-deployed searchgui tool offers the use of multiple database search algorithms (e.g., ms-gf+, myrimatch, omssa, comet, myrimatch, ms-amanda and novor), x!tandem was determined to have a balance of speed and sensitivity that made it a good choice, especially for a training resource. the outputs from searchgui are further filtered […]

PMCID: 5447515
PMID: 28580409
DOI: 10.1016/j.dib.2017.04.058

[…] results and explore peptides via sequence homology with sequenced proteins found in the entire uniprot database using blast. the program denovogui version 1.14.5 was used for this purpose , and both novor and pepnovo were used for peptide sequencing. the mass allowance parameters were, for precursor mass tolerance: 10 ppm, and a fragment mass tolerance of 0.5 da. post-translational […]

PMCID: 5417831
PMID: 28302922
DOI: 10.1074/mcp.O117.067728

[…] and processed as described in reference (). instead of performing traditional ms/ms database search, we used denovogui (ver. 1.14.5) () that contains the de novo sequencing software novor () to generate full-length peptide sequences directly from the ms/ms spectra, with 10 ppm precursor mass tolerance and 15 ppm fragment mass tolerance. carbamidomethylation of cysteine was set […]

PMCID: 5802045
PMID: 29450146
DOI: 10.1016/j.biopen.2017.03.001

[…] and explore peptides via sequence homology with sequenced proteins found in the entire uniprot database using blastp. the program denovogui version 1.14.5 was used for this purpose , and both novor and pepnovo were used for peptide sequencing. the mass allowance parameters were, for precursor mass tolerance: 10 ppm, and a fragment mass tolerance of 0.5 da. post-translational […]


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Novor institution(s)
School of Computer Science, University of Waterloo, Waterloo, ON, Canada

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