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Protocols

NPACT specifications

Information


Unique identifier OMICS_09224
Name NPACT
Alternative name N-Profile Analysis Computational Tool
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data GenBank format
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability No
Maintained No

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Information


Unique identifier OMICS_09224
Name NPACT
Alternative name N-Profile Analysis Computational Tool
Interface Web user interface
Restrictions to use None
Input data GenBank format
Programming languages Java
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for N-Profile Analysis Computational Tool

NPACT citations

 (5)
library_books

Pharmacophore modeling and in silico toxicity assessment of potential anticancer agents from African medicinal plants

2016
Drug Des Devel Ther
PMCID: 4938243
PMID: 27445461
DOI: 10.2147/DDDT.S108118

[…] Assessment of the toxicological profiles of the AfroCancer and NPACT datasets was run on the Derek Nexus platform. Derek Nexus is an expert, knowledge-based software that gives informative toxicity predictions quickly. The ability to predict potential toxicity of […]

library_books

Addressing Emerging Risks: Scientific and Regulatory Challenges Associated with Environmentally Persistent Free Radicals

2016
PMCID: 4924030
PMID: 27338429
DOI: 10.3390/ijerph13060573

[…] e (COPD) and respiratory infections reported in populations exposed to particulates from the combustion of biomass fuels for cooking [,]. In another example, the National Particle Component Toxicity (NPACT) initiative sought not only to determine an association between PM levels and health effects, but also utilized data from the EPA’s Chemical Speciation Network (CSN) to compare these health outc […]

call_split

Complete Genome Sequence of Streptomyces albus SM254, a Potent Antagonist of Bat White Nose Syndrome Pathogen Pseudogymnoascus destructans

2016
Genome Announc
PMCID: 4832174
PMID: 27081146
DOI: 10.1128/genomeA.00290-16
call_split See protocol

[…] omopolymer regions. The 7,170,504-bp genome (73.34% G+C) was annotated with Prokka v1.11 (). Suspect open reading frames (ORFs) which could potentially result from high G+C content were identified by NPACT () and manually corrected in all cases where the NPACT-predicted ORF had >90% BLAST identity to other Streptomyces proteins. Potential frameshifts were identified using the online submission che […]

library_books

Combining PM2.5 Component Data from Multiple Sources: Data Consistency and Characteristics Relevant to Epidemiological Analyses of Predicted Long Term Exposures

2015
Environ Health Perspect
PMCID: 4492258
PMID: 25738509
DOI: 10.1289/ehp.1307744

[…] Population. The NPACT study was based on the subjects who were originally recruited in MESA and consented to MESA Air or who were directly enrolled in MESA Air. The cohort includes approximately 7,000 participants re […]

library_books

Particulate matter components and subclinical atherosclerosis: common approaches to estimating exposure in a Multi Ethnic Study of Atherosclerosis cross sectional study

2013
PMCID: 3663826
PMID: 23641873
DOI: 10.1186/1476-069X-12-39

[…] The MESA Air and NPACT air monitoring campaign employed cohort-oriented fixed site monitors in which 2-week measurements of total PM2.5 and PM2.5 components were obtained. Using our primary approach to estimating expo […]

Citations

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NPACT institution(s)
Department of Molecular Genetics and Microbiology, University of Florida, Gainesville, FL, USA; Genetics Institute, University of Florida, Gainesville, FL, USA
NPACT funding source(s)
National Institutes of Health (NIH) Grant 5R01GM087485

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