NPEBseq statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

NPEBseq specifications


Unique identifier OMICS_01312
Name NPEBseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability No
Maintained No


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Publication for NPEBseq

NPEBseq in publication

PMCID: 4634584
PMID: 26538400
DOI: 10.1186/s12859-015-0794-7

[…] examples of the de methods for individual levels are (i) edger [], deseq [], and tcc [] for gene-level; (ii) cuffdiff2 [], iuta [], and splicingcompass [] for transcript-level; (iii) dexseq [] and npebseq [] for exon-level; and (iv) der finder [] for base-level. many methods can perform de analysis for multiple levels (e.g., cuffdiff2 can perform both gene- and transcript-level analysis) […]

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NPEBseq institution(s)
Center for Systems and Computational Biology, Molecular and Cellular Oncogenesis Program, The Wistar Institute, Philadelphia, PA, USA

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