NPS specifications

Information


Unique identifier OMICS_00505
Name NPS
Alternative name Nucleosome Positioning from Sequencing
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A ChIP-Seq tags file and a user-defined parameter file.
Input format BED, TXT
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.3.2
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainers


  • person_outline Hyunjin Shin <>
  • person_outline Liu Shirley <>
  • person_outline Chenfei Wang <>
  • person_outline Ying Lei <>

Publication for Nucleosome Positioning from Sequencing

NPS institution(s)
Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, MA, USA; Simons Center for Systems Biology, Institute for Advanced Study, Princeton, NJ, USA
NPS funding source(s)
Supported by NIH grant HG004069-02.

NPS review

star_border star_border star_border star_border star_border
star star star star star

Fabien Pichon

star_border star_border star_border star_border star_border
star star star star star
Desktop
You feed it with various histone modification signals and it should return nucleosome positions... but I was not very enthusiastic with results... Sometimes I was wondering where it finds nucleosomes in signal... and sometimes I was wondering why it didn't find one... Results should thus be taken carefully.