Protocols

npstat specifications

Information


Unique identifier OMICS_05826
Name npstat
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for npstat

npstat citation

call_split

Validation of Pooled Whole Genome Re Sequencing in Arabidopsis lyrata

2015
PLoS One
PMCID: 4604096
PMID: 26461136
DOI: 10.1371/journal.pone.0140462
call_split See protocol

[…] ele count of two reads. The nucleotide diversity and the genetic differentiation from the reference genome that are needed to set prior probabilities in the Bayesian model of Snape were calculated by NPStat []. We used the BEDTools software [] to calculate sequencing depth or depth of coverage per site, defined as the number of times each base was sequenced per individual or per population pool. W […]

npstat institution(s)
Center for Research in Agricultural Genomics (CRAG), UAB, Bellaterra, Spain

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