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NRG-CING specifications

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Unique identifier OMICS_21118
Name NRG-CING
Alternative name NMR Restraints Grid -Common Interface for NMR structure Generation
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

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Publication for NMR Restraints Grid -Common Interface for NMR structure Generation

NRG-CING citations

 (3)
library_books

CING: an integrated residue based structure validation program suite

2012
J Biomol NMR
PMCID: 3483101
PMID: 22986687
DOI: 10.1007/s10858-012-9669-7

[…] uality were obtained in the DRESS (Nabuurs et al. ) and RECOORD (Nederveen et al. ) databases of recalculated and refined NMR structures.In our experience, based on spot checking dozens of entries in NRG-CING, a properly refined ensemble of structures that has low green ROG (<~20 %) and high red ROG (>~50 %) scores can be labelled as highly troublesome. Entry 2kq3 showed numerous issues, in spite […]

library_books

ACPYPE AnteChamber PYthon Parser interfacE

2012
BMC Res Notes
PMCID: 3461484
PMID: 22824207
DOI: 10.1186/1756-0500-5-367

[…] structures were sorted by overall energy and the best 25 structures were validated through the iCING [] server, and then compared against the validation of the original NMR structures as provided by NRG-CING []. Double the number of default RECOORD timesteps were used during the SA and WR because of the size of the proteins and presence of ligand. […]

library_books

The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

2011
Nucleic Acids Res
PMCID: 3245068
PMID: 22144685
DOI: 10.1093/nar/gkr1196

[…] previous years, there is a strong representation of structure databases, including descriptions of the European and Japanese Protein Data Banks (PDBe, PDBj), two databases of refined NMR structures (NRG-CING and STAP Refinement of NMR database), and several other databases on protein structure and protein–protein interactions.An unusually high number of databases, including ChEMBL, FunCoup, MitoM […]


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NRG-CING institution(s)
IMM, Radboud University Nijmegen, Geert, Nijmegen, Netherlands; CMBI, Radboud University Nijmegen Medical Centre, Nijmegen, Netherlands; Department of Structural Biology, VIB and Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium; BioMagResBank, Department of Biochemistry, University of Wisconsin-Madison, Madison, WI, , USA; Department of Biochemistry, University of Leicester, Henry Wellcome Building, Leicester, UK
NRG-CING funding source(s)
Supported by The Netherlands Organization for Scientific Research) (grant 700.55.443.); Netherlands Bioinformatics Centre (NBIC); EU FP6 grants STREP Extend-NMR (LSHG-CT-2005-018988) and EMBRACE (LHSG-CT-2004-512092); FP7 WeNMR (grant 261572); Brussels Institute for Research and Innovation (Innoviris) (grant BB2B 2010-1-12); US National Library of Medicine (grant LM05799).

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