nSolver Analysis Software statistics

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nSolver Analysis Software specifications

Information


Unique identifier OMICS_02309
Name nSolver Analysis Software
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline nSolver Alysis Software Team <>

nSolver Analysis Software in publications

 (97)
PMCID: 5945842
PMID: 29748576
DOI: 10.1038/s41419-018-0546-5

[…] change)., infected cells were harvested and rna was extracted as detailed above. ncounter mouse immunology kit was used, following nanostring guidelines. raw rna counts were exported from the nsolver analysis software (nanostring). raw rna counts were normalized by housekeeping genes to account for the inter-sample variation of rna quantity. the selected housekeeping gene pool was built […]

PMCID: 5933777
PMID: 29723294
DOI: 10.1371/journal.pone.0196943

[…] digital images of the color-coded barcodes on the surface of the cartridge, and tabulating the barcode counts for each target mrna in each sample. the raw counts expression data was analyzed using nsolver analysis software (nanostring). briefly, we normalized samples according to six positive and eight negative control probes and the geometric mean of the three housekeeping genes. […]

PMCID: 5945498
PMID: 29755683
DOI: 10.18632/oncotarget.25065

[…] a high-density scanner (1155 fields of view per flow cell) using the ncounter digital analyzer. mirna expression levels were normalized to the expression of the top 100 expressed mirnas using the nsolver analysis software v1.1 (nanostring technologies), and mirnas with counts less than any of the negative control probes were excluded., primers and probes for mir-16, mir-215, mir-494, […]

PMCID: 5895714
PMID: 29643329
DOI: 10.1038/s41398-018-0122-x

[…] organoids were excluded from nanostring or qpcr analyses if rna yields were below 10 μg/μl. a custom 150-gene ncounter codeset was designed by nanostring technologies. data were analyzed with nsolver analysis software (nanostring technologies) and normalized to the total gene set. assays were performed according to the manufacturer’s instructions., rna was reverse-transcribed, and cdna […]

PMCID: 5955442
PMID: 29436902
DOI: 10.1080/21505594.2018.1438025

[…] data acquisition and analysis were carried out per instructions from nanostring. each rna sample was normalized to the housekeeping genes snb-1, ama-1, act-1, pmp-3, and tba-1 using the nsolver analysis software (nanostring technologies)., c. elegans were fixed overnight at 4°c in 2.5% glutaraldehyde, 1.0% paraformaldehyde in 0.05m sodium cacodylate buffer, ph 7.4 plus 3.0% sucrose. […]


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