NTSYSpc pipeline

NTSYSpc specifications

Information


Unique identifier OMICS_20570
Name NTSYSpc
Alternative name Numerical Taxonomy and Multivariate analysis System
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages MATLAB
License Other
Computer skills Medium
Version 2.2
Stability Stable
Maintained Yes

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Documentation


NTSYSpc IN pipelines

 (3)
2015
PMCID: 4595125
PMID: 26438052
DOI: 10.1186/s13104-015-1492-2

[…] genetic distance matrices (genetic distance matrices formed from 7-, 8-, 10- and 12-markers) for comparison to a complete set of polymorphic markers with no missing data (1006 snp markers). ntsyspc v2.21c [22] was used to estimate correlations between genetic matrices for minimal marker sets (6-, 7-, 8-, 10-, 12-markers) and the complete data set using 3-way mantel’s t test [23] […]

2015
PMCID: 4636831
PMID: 26545737
DOI: 10.1186/s12864-015-2180-2

[…] evolutionary genetics analysis (mega), version 6 [21]. mantel tests [22] were used to compute the correlation between the genetic distance matrices derived from all eight datasets using ntsys-pc (numerical taxonomy and multivariate analysis system), version 2.11 [23]. pearson correlation coefficients between genetic purity values obtained for all eight datasets were calculated using minitab […]

2015
PMCID: 4681178
PMID: 26673149
DOI: 10.1186/s12864-015-2245-2

[…] distance [43] between pairwise individuals under powermarker version 3.25 [39]. furthermore, according to the nei’s genetic distance matrix, a principal component analysis (pca) was performed using ntsyspc version 2.1 [44]. finally, the pairwise relatedness coefficients were calculated using spadige version 1.4c with the negative values among individuals set as zero and then all the values […]

NTSYSpc institution(s)
Department of Ecology and Evolution State University of New York Stony Brook, NY, USA

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