NucHunter statistics

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Associated diseases

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NucHunter specifications

Information


Unique identifier OMICS_00509
Name NucHunter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Ho-Ryun Chung <>
  • person_outline Alessandro Mammana <>

Publication for NucHunter

NucHunter in publications

 (2)
PMCID: 5889099
PMID: 27851971
DOI: 10.1016/j.celrep.2016.10.054

[…] in , and downloaded from the university of california, santa cruz (ucsc) genome browser. nucleosome positions for blueprint samples derived from six histone modification chip-seq experiments using nuchunter () were downloaded from the blueprint data portal. dna methylation information was not used in the comparison of nucleosome localization., whole-genome dna methylation and nucleosome […]

PMCID: 4504042
PMID: 25990474
DOI: 10.1186/s13059-015-0671-8

[…] cutoff value of 1e-5., nucleosome prediction with nupop [] (hmm order, 3; markov model, linker-nucleosome; markov model species, null) on the pt1.86 were compared with nucleosome mapping using nuchunter []. the following parameters are used: chunk size, 1 mb; p-value threshold, 1e-6; z-score, 3.0; interval length, 146 bp. nupop predicts 161,875 nucleosomes. genome-wide di-nucleotide […]


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NucHunter institution(s)
Otto-Warburg-Laboratories, Epigenomics and Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany
NucHunter funding source(s)
Supported by the International Max Planck Research School for Computational Biology and Scientific Computing; and the Bundesministerium fur Bildung und Forschung for the ‘Deutsches Epigenom Programm’ (DEEP) [01KU1216C].

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