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Nucleosome Positioning from Sequencing NPS

A python software package that can identify nucleosome positions given histone-modification ChIP-seq or nucleosome sequencing at the nucleosome level.

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1 user review

1 user review

Fabien Pichon's avatar image Fabien Pichon's country flag

Fabien Pichon

You feed it with various histone modification signals and it should return nucleosome positions... but I was not very enthusiastic with results... Sometimes I was wondering where it finds nucleosomes in signal... and sometimes I was wondering why it didn't find one... Results should thus be taken carefully.

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NPS classification

NPS specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Python
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

NPS distribution

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No versioning.

Credits

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Publications

Institution(s)

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, MA, USA

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