NPS specifications

Unique identifier:
OMICS_00505
Software type:
Package/Module
Restrictions to use:
None
Input format:
BED, TXT
Programming languages:
Python
Version:
1.3.2
Maintained:
Yes
Name:
Nucleosome Positioning from Sequencing
Interface:
Command line interface
Input data:
A ChIP-Seq tags file and a user-defined parameter file.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

versioning

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No versioning.

NPS support

Maintainers

  • Hyunjin Shin <>
  • Liu Shirley <>
  • Chenfei Wang <>
  • Ying Lei <>

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Credits

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Publications

Institution(s)

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, MA, USA; Simons Center for Systems Biology, Institute for Advanced Study, Princeton, NJ, USA

Funding source(s)

Supported by NIH grant HG004069-02.

User review

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1 user review

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Fabien Pichon's avatar image Fabien Pichon's country flag

Fabien Pichon

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You feed it with various histone modification signals and it should return nucleosome positions... but I was not very enthusiastic with results... Sometimes I was wondering where it finds nucleosomes in signal... and sometimes I was wondering why it didn't find one... Results should thus be taken carefully.

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