NucliTrack specifications
Information
| Unique identifier | OMICS_19409 |
|---|---|
| Name | NucliTrack |
| Software type | Application/Script |
| Interface | Command line interface, Graphical user interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | Python |
| Computer skills | Advanced |
| Version | 1.2.0 |
| Stability | Stable |
| Source code URL | https://codeload.github.com/samocooper/nuclitrack/tar.gz/1.2.0 |
| Maintained | Yes |
Download
Versioning
No version available
Documentation
- Video: https://youtu.be/k2V-Jw8mDes
Maintainer
- person_outline Sam Cooper
Additional information
https://github.com/samocooper/nuclitrack/blob/master/docs/index.rst
Publication for NucliTrack
library_books
NucliTrack: an integrated nuclei tracking application
2017 Bioinformatics
PMCID: 5860035
PMID: 28637183
DOI: 10.1093/bioinformatics/btx404
NucliTrack citation
library_books
NucliTrack: an integrated nuclei tracking application
2017
Bioinformatics
PMCID: 5860035
PMID: 28637183
DOI: 10.1093/bioinformatics/btx404
[…] that segmentation, track inspection and track correction have to be performed in other software which is non-trivial for scientists with little programming expertise (). Therefore, we have developed NucliTrack an integrated Python package that allows efficient segmentation, feature extraction and tracking of fluorescently labelled nuclei or cells through an intuitive graphical interface (). Addit […]
NucliTrack institution(s)
The Institute of Cancer Research, London, UK; Department of Computational Systems Medicine, Imperial College, South Kensington Campus, London, UK
NucliTrack funding source(s)
Supported by the NIHR Imperial BRC, the STRATiGRAD graduate training program, a BBSRC Strategic LoLa grant (BB/MM00354X/1), a Cancer Research UK Programme Foundation Award (C37275/1A20146).
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