NucPosSimulator statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

NucPosSimulator specifications

Information


Unique identifier OMICS_00512
Name NucPosSimulator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Source code URL http://bioinformatics.fh-stralsund.de/nucpos/NucPosSimulator_source.zip
Maintained Yes

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Maintainers


  • person_outline Gero Wedemann <>
  • person_outline Robert Schöpflin <>

Additional information


http://bioinformatics.fh-stralsund.de/nucpos/quick_start.html

Information


Unique identifier OMICS_00512
Name NucPosSimulator
Interface Web user interface
Restrictions to use None
Input format BED
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Gero Wedemann <>
  • person_outline Robert Schöpflin <>

Additional information


http://bioinformatics.fh-stralsund.de/nucpos/quick_start.html

Publication for NucPosSimulator

NucPosSimulator in publication

PMCID: 5137421
PMID: 27488188
DOI: 10.1093/nar/gkw684

[…] only one of any potential pcr duplicates was kept. the mapping results were visualized using gbrowse 2.0 ()., nucleosomes were called using the nucpossimulator (), which identifies non-overlapping nucleosomes using mnase-seq fragment centers. we calculated the degree of translational positioning for each called nucleosome in mac, defined […]


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NucPosSimulator institution(s)
Institute for Applied Computer Science, University of Applied Sciences Stralsund, Stralsund, Germany; Deutsches Krebsforschungszentrum (DKFZ) and BioQuant, Heidelberg, Germany
NucPosSimulator funding source(s)
Supported within project EpiGenSys by the German Federal Ministry of Education and Research (BMBF) as a partner of the ERASysBioþ initiative in the EU FP7 ERA-NET Plus program [grant number 0315712C and 0315712A, the Heidelberg Center for Modeling and Simulation in the Biosciences (BIOMS) and a Deutsches Krebsforschungszentrum intramural grant.

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