NucPred statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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NucPred specifications

Information


Unique identifier OMICS_25302
Name NucPred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Robert MacCallum <>
  • person_outline Markus Brameier <>

Publication for NucPred

NucPred in pipelines

 (4)
2018
PMCID: 5876317
PMID: 29628931
DOI: 10.3389/fpls.2018.00252

[…] subcellular location of proteins was predicted by targetp, and the proteins located in mitochondria were removed. the prediction of transmembrane domain and nls were performed using tmhmm and nucpred () based on a sequence score ≥ 0.5. domains were predicted in local putty based on hmmer 3.1b1 () and the active conserved domains were blasted to the pfam database (). a phylogenetic […]

2017
PMCID: 5469009
PMID: 28616073
DOI: 10.1186/s13068-017-0807-z

[…] (https://www.ncbi.nlm.nih.gov/structure/cdd/wrpsb.cgi) [–]. predicted nuclear localization signals (nls) in the amino acid sequences were determined using the nucpred (http://www.sbc.su.se/~maccallr/nucpred/) [] and predicted nuclear export signals (nes) were detected with the netnes 1.1 server (http://www.cbs.dtu.dk/services/netnes/) []., protein sequence identity of full-length pdr-1 […]

2017
PMCID: 5597180
PMID: 28902917
DOI: 10.1371/journal.pone.0183858

[…] []). the organelle distribution for the hsp70 and j-protein complements were conducted, in the absence of experimental data, using a number of online programs that included nucpred (http://www.sbc.su.se/~maccallr/nucpred/cgi-bin/single.cgi; []), mitoprot (http://ihg.gsf.de/ihg/mitoprot.html; []), multiloc (http://abi.inf.uni-tuebingen.de/services/multiloc; []), signalp […]

2015
PMCID: 4505938
PMID: 26186223
DOI: 10.1371/journal.pone.0133307

[…] model portal (pmp), http://www.proteinmodelportal.org/. the sequence alignments were obtained by clustal_x [], http://www.clustal.org/. predictions for the potential nls signals were performed by nucpred [], http://www.sbc.su.se/~maccallr/nucpred/, psortii [], http://www.psort.org/, cnls mapper http://nls-mapper.iab.keio.ac.jp/cgi-bin/nls_mapper_y.cgi. predictions of the potential nes signals […]


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NucPred in publications

 (58)
PMCID: 5923459
PMID: 29614718
DOI: 10.3390/v10040165

[…] and the titter for the mutant virus 2 was within the order 1010 hu/ml., sequences of the vp2/vp3 and vp1 capsid proteins of wt, mutant 1, mutant 2, and mutant 3 of mpyv were analyzed using the nucpred program, available online []., viral particles were cleaned from extracellular dna by treatment with dnase i (0.4 u/µl) to remove residual extracellular dna. after dnase inactivation, capsids […]

PMCID: 5940170
PMID: 29593073
DOI: 10.1534/g3.118.200172

[…] a more direct role in the nucleus, since vps74-gfp localizes to the nucleus, as well as the cytoplasm (figure s5) (). indeed, using two nuclear localization prediction programs (cnls mapper and nucpred), vps74 is predicted to have a weak nuclear localization signal in its n-terminus (; ; ). we conclude that vps74 regulates the fitness of yku70δ cells independently of sac1. overall, genetic […]

PMCID: 5876317
PMID: 29628931
DOI: 10.3389/fpls.2018.00252

[…] subcellular location of proteins was predicted by targetp, and the proteins located in mitochondria were removed. the prediction of transmembrane domain and nls were performed using tmhmm and nucpred () based on a sequence score ≥ 0.5. domains were predicted in local putty based on hmmer 3.1b1 () and the active conserved domains were blasted to the pfam database (). a phylogenetic […]

PMCID: 5825156
PMID: 29474435
DOI: 10.1371/journal.pone.0193528

[…] protein- contains 4 sims and breast cancer type 2 susceptibility protein (brca2, tb927.1.640) harbors 14 sims. near 75% of the sim candidates are predicted to have nuclear localization according to nucpred server [] with a nucpred-score >0.5, including a subgroup of 40 proteins displaying the classical eukaryotic nuclear localization signal krxr that is functional in kinetoplastid parasites. […]

PMCID: 5847190
PMID: 29368217
DOI: 10.1007/s00253-018-8753-7

[…] upon induction and the mechanism which keeps gaar inactive under non-inducing conditions is likely to occur in the nucleus. prediction of nuclear localization signals using the prediction tool nucpred (brameier et al. ) indicated that gaar likely localizes in the nucleus (score of 0.90) whereas gaax (score of 0.27) is expected to spend less time in the nucleus. nevertheless, gaax-egfp […]


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NucPred institution(s)
Bioinformatics Research Center (BiRC), University of Aarhus, Denmark; Stockholm Bioinformatics Center (SBC), Stockholm University, Stockholm, Sweden; Division of Cell & Molecular Biology, Imperial College London, London, UK

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