NUCwave statistics

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Citations per year

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Popular tool citations

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Associated diseases

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NUCwave specifications

Information


Unique identifier OMICS_07411
Name NUCwave
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for NUCwave

NUCwave in publications

 (2)
PMCID: 5034280
PMID: 27659668
DOI: 10.1038/srep33970

[…] genome, the genome positions of individual nucleosomes in the genome were estimated. the precise positions calculated by analysis corresponded to the known positions of these nucleosomes and nucwave software was used for the mapped sequence reads. nucleosomes overlapping the tss of gene-coding regions were defined as +1 nucleosomes and a nucleosome immediately before a +1 nucleosome […]

PMCID: 4422121
PMID: 25854683
DOI: 10.1098/rsob.140218

[…] relative to the average genome-wide depth coverage to generate the final nucleosome occupancy map. this protocol has been recently incorporated into a bioinformatic tool based in wavelets (nucwave) for the automatic generation of nucleosome occupancy maps []., after wavelet-smoothing, the centre of well-positioned nucleosomes was defined as peak positions whose level of occupancy […]


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