Numpy statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Numpy
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Tool usage distribution map

This map represents all the scientific publications referring to Numpy per scientific context
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Protocols

Numpy specifications

Information


Unique identifier OMICS_20143
Name Numpy
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.13.1
Stability Stable
Maintained Yes

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Additional information


Tuto: https://docs.scipy.org/doc/numpy-dev/user/quickstart.html

Numpy citations

 (759)
call_split

Bayesian model selection for complex dynamic systems

2018
Nat Commun
PMCID: 5935699
PMID: 29728622
DOI: 10.1038/s41467-018-04241-5
call_split See protocol

[…] ps://github.com/christophmark/bayesloop). The website bayesloop.com further provides access to code examples, tutorials and documentation. bayesloop uses functionality of other Python modules, namely NumPy, SciPy (http://www.scipy.org), SymPy, Matplotlib, Pathos, and tqdm. […]

call_split

Plasmepsin II–III copy number accounts for bimodal piperaquine resistance among Cambodian Plasmodium falciparum

2018
Nat Commun
PMCID: 5931971
PMID: 29720620
DOI: 10.1038/s41467-018-04104-z
call_split See protocol

[…] n to each sample’s dose–response curve and integrating the fitted equation over the region corresponding to the second response curve. These equations were fit to the data using the polyfit module in NumPy, a fundamental package for scientific computing using Python. We chose to use a six-dimensional least-square polynomial equation because it captures the dynamics of the second response curve bet […]

library_books

Computer Vision Evidence Supporting Craniometric Alignment of Rat Brain Atlases to Streamline Expert Guided, First Order Migration of Hypothalamic Spatial Datasets Related to Behavioral Control

2018
Front Syst Neurosci
PMCID: 5938415
PMID: 29765309
DOI: 10.3389/fnsys.2018.00007

[…] the ROI. The pseudocode in Figure illustrates the complete process. The program was written in Python using OpenCV3 (Open Source Computer Vision Library; opencv.org), PyQt5, Scikit-Learn, SciPy, and NumPy; and is available for download at http://www.github.com/DeveloperJose/Vision-Rat-Brain. […]

library_books

ExGUtils: A Python Package for Statistical Analysis With the ex Gaussian Probability Density

2018
Front Psychol
PMCID: 5939052
PMID: 29765345
DOI: 10.3389/fpsyg.2018.00612

[…] ed, stability and numerical precision.As mentioned, the package has two modules: pyexg and uts. The first one comprises all functions with source code programed in python, some of which depend on the numpy, scipy and random python packages. On the other hand, the module uts contains functions with source code programmed in C. In Table one can find a complete list of all functions contained in bot […]

call_split

The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins

2018
PMCID: 5946844
PMID: 29432771
DOI: 10.1016/j.ijpara.2017.11.003
call_split See protocol

[…] analysis. For normalisation, a subsampled OTU table was generated by random sampling (without replacement) of the input OTU table using an implementation of the Mersenne twister algorithm (http://www.numpy.org). Cumulative-sum scaling (CSS) and log2 transformation were applied to account for the non-normal distribution of taxonomic counts data. Statistical analyses were conducted on the Calypso pl […]

call_split

Gravisensors in plant cells behave like an active granular liquid

2018
Proc Natl Acad Sci U S A
PMCID: 5960325
PMID: 29712863
DOI: 10.1073/pnas.1801895115
call_split See protocol

[…] All image analyses were done with custom-developed Python scripts, based on usual scientific libraries (Numpy 1.11.1 and Matplotlib 1.5.1) and image processing tools from Scikit-image (version 0.12.3) and OpenCV (version 2.4.11). […]


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