NURD specifications

Information


Unique identifier OMICS_01283
Name NURD
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data Reads mapping file, gene annotation
Input format GTF,refFlat,SAM
Output data Isoform expression estimation
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 1.1.1
Stability Stable
Maintained Yes

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Publication for NURD

NURD in publication

PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] transcript and output within-sample normalized values corrected for sequencing biases [, , ]. additionally, the rsem algorithm uses an expectation maximization approach that returns tpm values []. nurd [] provides an efficient way of estimating transcript expression from se reads with a low memory and computing cost., differential expression analysis (fig. ) requires that gene expression […]


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NURD institution(s)
MOE Key Laboratory of Bioinformatics, Bioinformatics Division and Center for Synthetic and Systems Biology, Tsinghua University, Beijing, China; School of Life Sciences, Tsinghua University, Beijing, China
NURD funding source(s)
Supported in part by the National Basic Research Program of China (2012CB316504) and the Hi-tech Research and Development Program of China (2012AA020401).

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