O-Miner specifications

Information


Unique identifier OMICS_20055
Name O-Miner
Interface Web user interface
Restrictions to use None
Input data For Transcriptomics: raw and normalised data from Affymetrix expression platforms, normalised and unnormalised expression data from Illumina expression platforms, raw data from Affymetrix Genechip Human Exon array 1.0ST raw and unnormalised data from the Affymetrix multispecies miRNA array GeneChip miRNA 2.0 and 3.0; for Genomics: raw image CEL files, log2ratios, segmented or binary coded data for a number of Affymetrix SNP arrays; for Methyltation : Raw data (idat files) or a normalised data matrix from Illumina Infinium HumanMethylation27 and HumanMethylation450 BeadChip.
Output data Detailed data analysis reports and diagrams.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Claude Chelala <>
  • person_outline O-Miner Team <>

Additional information


http://o-miner.org/guide_2.0.html

Publications for O-Miner

O-Miner in publication

PMCID: 4978703
PMID: 27452468
DOI: 10.1016/j.celrep.2016.06.097

[…] mary university of london). raw image files were processed and analyzed in illumina beadstudio. this was followed by quality control and normalization of array data using the upgraded version of the o-miner transcriptomics analysis platform () adapting the lumi r bioconductor package (https://www.bioconductor.org/packages/release/bioc/html/lumi.html). differential expression analysis […]


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O-Miner institution(s)
Barts Cancer Institute, Queen Mary University of London, London, UK; Computational Biology Centre at the Life Science Initiative, Queen Mary University of London, London, UK
O-Miner funding source(s)
Supported by Cancer Research UK (Grant A12008, Barts Cancer Research UK Centre Award) and EPSRC (DTP grant), Pancreatic Cancer Research Fund (Tissue Bank Award), Breast Cancer Now (Tissue Bank Award), Barts and the London Charity (grant 467/1690).

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