Oases specifications


Unique identifier OMICS_01322
Name Oases
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux
Programming languages C
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 0.2.09
Stability Stable
Maintained Yes



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  • person_outline Marcel Schulz <>
  • person_outline Daniel Zerbino <>

Oases article

Oases citation

PMCID: 4391584

[…] retained (figure 1, table 1) and filtered for quality, resulting in 185,410,176 high quality illumina sequences that were used in a de novo transcriptome assembly using the transcriptome assembler oases [38]. a total of 159,755,431 (86.16%) reads were assembled into 165,668 transcripts including isoforms (table 2). possible contaminants in the transcript assemblies were identified and removed […]

Oases institution(s)
Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany

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