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Oases | De novo RNA-seq assembly across the dynamic range of expression levels

A de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly.

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Oases classification

Oases specifications

Unique identifier:
OMICS_01322
Interface:
Command line interface
Biological technology:
Illumina, Life Technologies, Roche
Programming languages:
C
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

Oases distribution

versioning

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Credits

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Publications

Institution(s)

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany

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