Consists of a partial identity model that improves the probabilistic identity associations among samples. SPIM employs the spatial location where samples were collected to proceed. It resolves the uncertainty in individual identities by capitalizing on two key ecological spatial concepts: population density and home range size. This tool can improve density determination into the categorical spatial mark-resight (SMR) model.
Provides a fully automated video analysis tool for counting worms in two regions. WormTrapAssay evaluates videos from trap assays, extracts time-lapse images from a video and binarizes the images using local adaptive thresholding. The software displays the number of worms in each trap for each image. This module is part of the QuantWorm software.
Counts worms, especially in a context of chemotaxis. WormCounter offers to users the possibility to choose image processing or manual inspection. Image processing enables batch analysis of multiple well or plate images. Manual inspection allows users to review the result of image analysis and adjusts errors in fully automated analysis. This module is part of the QuantWorm software.
Calculates the number and the size of seeds thank to a white paper sheet of standard size as a background. SeedCounter automates evaluation of phenotypic parameters of grains using mobile devices running the Android operational system. It is efficient and sufficiently accurate for the large-scale analysis of phenotypic characteristics in wheat grains. The tool converts pixels into the metric scale to estimate the output values.
Allows image capture and analysis for measurement of cereal grain size and colour. GrainScan uses utilizes reflected light to capture colour information described in a device independent colour space (CIELAB), allowing comparison of colour data between scanning devices. The software enables the standardized study of grain size, shape and colour. It can be can be implemented for many different plant species that also have regular, approximately elliptical morphology.
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