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OpenCFU
Enumerates clustered circular objects such as bacterial colonies. OpenCFU can handle digital pictures as well as live stream from a video device/webcam. This software is cross-platform, fast, reliable and allows the user to implement intuitive filters. It was shown to be very accurate and, with high definition pictures, did not generate more errors than the average human error. Finally, OpenCFU provides postprocessing filters to eliminate detected objects according to their intensity and colour similarity. This makes the method even more robust since it can be used to exclude circular artefacts such as contaminant bacteria.
VIAME / Video and Image Analytics for Marine Environments
Provides image and video processing algorithms in a processing framework. VIAME is a computer vision library targeting marine species analytics. It integrates a modular dataflow architecture that enables straightforward integration of a wide variety of third party analytics, libraries and tools. This application is based on KWIVER, the Kitware Video and Image Exploitation and Retrieval toolkit. It can also be used as a general computer vision toolkit.
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