Offers a platform for subtomograms analysis. TomoMiner is an open source software which consists of a set of methods for (i) large-scale subtomogram ranking (ii) template matching, (iii) averaging, and (iv) aligning. This application is able to handle more than 100 000 subtograms in a row. It aims to complement other existing approaches for analysis and exists as a standalone application or as a cloud-based implementation, called TomoMinerCloud, using Amazon AWS.
Allows quantification of Drosophila egg laying. Quantifly automates egg counting after a brief training period. The software consists of a baseline algorithm with the bias correction, along with a regions of interest (ROI) labelling interface. Users are required to train the algorithm by identifying eggs within a few ROIs on several exemplar images, and, then, the software uses the model trained to detect eggs in a batch of images.