OCTOPUS specifications

Information


Unique identifier OMICS_14317
Name OCTOPUS
Alternative name obtainer of correct topologies for uncharacterized sequences
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Output data A predicted transmembrane protein topology.
Output format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Arne Elofsson <>

Information


Unique identifier OMICS_14317
Name OCTOPUS
Alternative name obtainer of correct topologies for uncharacterized sequences
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data An amino acid sequence.
Input format FASTA
Output data A predicted transmembrane protein topology.
Output format FASTA
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Requirements CMake, GCC, Perl, BLAST, PSI-BLAST
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Arne Elofsson <>

OCTOPUS article

OCTOPUS institution(s)
Department of Biochemistry and Biophysics/Center for Biomembrane Research/Stockholm Bioinformatics Center, The Arrhenius Laboratories for Natural Sciences, Stockholm University, Stockholm, Sweden
OCTOPUS funding source(s)
This work was supported by grants from the Swedish Natural Sciences Research Council, the Wallenberg Consortium North, the Knut & Alice Wallenberg Foundation and the Foundation for Strategic Research.

OCTOPUS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review OCTOPUS