OCTOPUS specifications

Unique identifier:
OMICS_14317
Interface:
Web user interface
Input data:
An amino acid sequence.
Output data:
A predicted transmembrane protein topology.
Computer skills:
Basic
Maintained:
Yes
Name:
obtainer of correct topologies for uncharacterized sequences
Restrictions to use:
None
Input format:
FASTA
Output format:
FASTA
Stability:
Stable

OCTOPUS specifications

Unique identifier:
OMICS_14317
Software type:
Application/Script
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Output format:
FASTA
License:
GNU General Public License version 2.0
Stability:
Stable
Maintained:
Yes
Name:
obtainer of correct topologies for uncharacterized sequences
Interface:
Command line interface
Input data:
An amino acid sequence.
Output data:
A predicted transmembrane protein topology.
Operating system:
Unix/Linux
Computer skills:
Advanced
Requirements:
CMake, GCC, Perl, BLAST, PSI-BLAST

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OCTOPUS distribution

download

OCTOPUS support

Documentation

Maintainer

  • Arne Elofsson <>
  • Arne Elofsson <>

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Publications

Institution(s)

Department of Biochemistry and Biophysics/Center for Biomembrane Research/Stockholm Bioinformatics Center, The Arrhenius Laboratories for Natural Sciences, Stockholm University, Stockholm, Sweden

Funding source(s)

This work was supported by grants from the Swedish Natural Sciences Research Council, the Wallenberg Consortium North, the Knut & Alice Wallenberg Foundation and the Foundation for Strategic Research.

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