OccuPeak statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Peak calling chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

OccuPeak specifications

Information


Unique identifier OMICS_11193
Name OccuPeak
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM
Output data A file including identified peaks and an optional summary of the settings used in analyses.
Output format BED
Operating system Unix/Linux, Windows
Programming languages MATLAB
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainers


  • person_outline Jan Ruijter <>
  • person_outline Phil Barnett <>

Publication for OccuPeak

OccuPeak in publication

PMCID: 4015328
PMID: 24770533
DOI: 10.1038/ncomms4680

[…] gene assay (invitrogen)., chip- seq data for h3k27ac in chamber-katushka/av canal-egfp-sorted cells chamber-katushka/av canal-egfp was processed using an in-house peak calling algorithm dubbed occupeak (van duijvenboden et al., submitted). using an identical threshold (p=0.01), peak calling resulted in 87,572 and 67,092 h3k27ac peaks in av canal and chamber tissue, respectively., […]


To access a full list of publications, you will need to upgrade to our premium service.

OccuPeak institution(s)
Department of Anatomy, Embryology & Physiology, Academic Medical Centre, Amsterdam, Netherlands
OccuPeak funding source(s)
Supported by the CHeartED (Health-F2-2008-223040); and a fellowship of the Academic Medical Centre, Amsterdam.

OccuPeak reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review OccuPeak