OccuPeak statistics

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Citations per year

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Tool usage distribution map

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Associated diseases

Associated diseases

OccuPeak specifications


Unique identifier OMICS_11193
Name OccuPeak
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM
Output data A file including identified peaks and an optional summary of the settings used in analyses.
Output format BED
Operating system Unix/Linux, Windows
Programming languages MATLAB
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes



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  • person_outline Jan Ruijter <>
  • person_outline Phil Barnett <>

Publication for OccuPeak

OccuPeak in publication

PMCID: 4015328
PMID: 24770533
DOI: 10.1038/ncomms4680

[…] gene assay (invitrogen)., chip- seq data for h3k27ac in chamber-katushka/av canal-egfp-sorted cells chamber-katushka/av canal-egfp was processed using an in-house peak calling algorithm dubbed occupeak (van duijvenboden et al., submitted). using an identical threshold (p=0.01), peak calling resulted in 87,572 and 67,092 h3k27ac peaks in av canal and chamber tissue, respectively., […]

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OccuPeak institution(s)
Department of Anatomy, Embryology & Physiology, Academic Medical Centre, Amsterdam, Netherlands
OccuPeak funding source(s)
Supported by the CHeartED (Health-F2-2008-223040); and a fellowship of the Academic Medical Centre, Amsterdam.

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