Octopus-toolkit specifications

Information


Unique identifier OMICS_26786
Name Octopus-toolkit
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format FASTQ,SRA, BED, SAM, BAM, VCF, TXT
Output format FASTQ,SRA, BED, SAM, BAM, VCF, TXT, FAI, BAI
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Python, R
License GNU General Public License version 3.0
Computer skills Medium
Version 2.1.0
Stability Stable
Requirements Aspera, SRA Toolkit, FastQC, Trimmomatic, HISAT2, STAR, Samtools, HOMER
Maintained Yes

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Versioning


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Documentation


Maintainers


  • person_outline Keunsoo Kang <>
  • person_outline Daeyoup Lee <>
  • person_outline Octopus-toolkit Team <>

Additional information


http://octopus-toolkit2.readthedocs.io/en/latest/tutorial.html

Octopus-toolkit article

Octopus-toolkit institution(s)
Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Korea; Laboratory of Genetics and Physiology, National Institute of Diabetes, Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA; Department of Microbiology, Dankook University, Cheonan, Korea
Octopus-toolkit funding source(s)
Supported by National R&D Program for Cancer Control, Ministry of Health & Welfare, Republic of Korea [1720100]; and Mid-career Researcher Program through the National Research Foundation of Korea (NRF) [2016R1A2B2006354] funded by the Ministry of Science and ICT.

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