Oculus specifications

Information


Unique identifier OMICS_17644
Name Oculus
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA, FASTQ
Operating system Unix/Linux
Programming languages C++, Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.1.2
Stability Stable
Requirements Bowtie or BWA or another SAM-compatible alignment algorithm
Maintained Yes

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Documentation


Maintainer


  • person_outline Arul Chinnaiyan <>

Additional information


https://github.com/veeneman/oculus-bio/blob/master/INSTALL

Publication for Oculus

Oculus institution(s)
Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA; Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Pathology, University of Michigan Medical School, Ann Arbor, MI, USA; Howard Hughes Medical Institute, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Urology, University of Michigan Medical School, Ann Arbor, MI, USA
Oculus funding source(s)
Supported by the Doris Duke Charitable Foundation Clinical Scientist Award, a DOD Breast Cancer Predoctoral Research Grant (W81XWH-11-1-0136), the National Science Foundation, the Program in Biomedical Sciences at the University of Michigan and the National Science Foundation under Grant 0903629.

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