Oculus specifications

Unique identifier:
OMICS_17644
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
0.1.2
Requirements:
Bowtie or BWA or another SAM-compatible alignment algorithm
Name:
Oculus
Interface:
Command line interface
Input format:
FASTA, FASTQ
Programming languages:
C++, Perl
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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No versioning.

Oculus distribution

download

Oculus support

Documentation

Maintainer

  • Arul Chinnaiyan <>

Additional information

https://github.com/veeneman/oculus-bio/blob/master/INSTALL

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Credits

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Publications

Institution(s)

Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA; Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Pathology, University of Michigan Medical School, Ann Arbor, MI, USA; Howard Hughes Medical Institute, University of Michigan Medical School, Ann Arbor, MI, USA; Department of Urology, University of Michigan Medical School, Ann Arbor, MI, USA

Funding source(s)

Supported by the Doris Duke Charitable Foundation Clinical Scientist Award, a DOD Breast Cancer Predoctoral Research Grant (W81XWH-11-1-0136), the National Science Foundation, the Program in Biomedical Sciences at the University of Michigan and the National Science Foundation under Grant 0903629.

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